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  5. Cpa|evm.model.tig00000571.29

Cpa|evm.model.tig00000571.29 (tig00000571_g2183.t1)


Aliases : tig00000571_g2183.t1

Description : Protein biosynthesis.cytosolic ribosome.small subunit (SSU).SSU processome.UPT6 assembly factor


Gene families : OG_01_0002785 (OrthoFinder) Phylogenetic Tree(s): OG0002785_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Cpa|evm.model.tig00000571.29
Cluster HCCA: Cluster_45

Target Alias Description ECC score Gene Family Method Actions
Cre10.g442000 30790656 Protein biosynthesis.cytosolic ribosome.small subunit... 0.14 OrthoFinder
Cz03g13170.t1 No alias U3 small nucleolar RNA-associated protein 6 [Interproscan]. 0.06 OrthoFinder
Dusal.0174s00015.1 33196283 U3 small nucleolar RNA-associated protein 6 [Interproscan]. 0.04 OrthoFinder
EOD04628 No alias U3 small nucleolar RNA-associated protein 6 [Interproscan]. 0.11 OrthoFinder
EOD34666 No alias U3 small nucleolar RNA-associated protein 6 [Interproscan]. 0.01 OrthoFinder
OT_02G00930.1 No alias U3 small nucleolar RNA-associated protein 6 [Interproscan]. 0.03 OrthoFinder
PTI_08G02440.1 No alias U3 small nucleolar RNA-associated protein 6 [Interproscan]. 0.11 OrthoFinder
Sro757_g197930.1 Contig322.g4282 RNA-associated protein 6 homolog 0.11 OrthoFinder
TP16G00520.1 No alias U3 small nucleolar RNA-associated protein 6 [Interproscan]. 0.05 OrthoFinder
Transcript_contig_66361 66361 U3 small nucleolar RNA-associated protein 6 [Interproscan]. 0.07 OrthoFinder
Vocar.0001s1250.1 32884322 U3 small nucleolar RNA-associated protein 6 [Interproscan]. 0.02 OrthoFinder
XM_002507215.1 MICPUN_107353, 107353 Hypothetical protein (UTP6) 0.01 OrthoFinder
lcl|BLLF01005177.1_cds_GFH30837.1_25314 HaLaN_29763, GFH30837 Hypothetical protein 0.02 OrthoFinder
lcl|LHPG02000007.1_cds_PRW57423.1_9057 PRW57423 U3 small nucleolar RNA-associated 6-like protein 0.1 OrthoFinder
lcl|VRMN01000001.1_cds_KAA8499489.1_8442 KAA8499489 U3 small nucleolar RNA-associated protein 6 0.03 OrthoFinder

Type GO Term Name Evidence Source
BP GO:0000462 maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) IEA Interproscan
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Type GO Term Name Evidence Source
BP GO:0000959 mitochondrial RNA metabolic process IEP Enrichment
BP GO:0001522 pseudouridine synthesis IEP Enrichment
MF GO:0003674 molecular_function IEP Enrichment
MF GO:0003676 nucleic acid binding IEP Enrichment
MF GO:0003677 DNA binding IEP Enrichment
MF GO:0003899 DNA-directed 5'-3' RNA polymerase activity IEP Enrichment
MF GO:0004809 tRNA (guanine-N2-)-methyltransferase activity IEP Enrichment
MF GO:0005488 binding IEP Enrichment
MF GO:0005515 protein binding IEP Enrichment
CC GO:0005575 cellular_component IEP Enrichment
CC GO:0005730 nucleolus IEP Enrichment
CC GO:0005739 mitochondrion IEP Enrichment
BP GO:0006351 transcription, DNA-templated IEP Enrichment
MF GO:0008134 transcription factor binding IEP Enrichment
MF GO:0008170 N-methyltransferase activity IEP Enrichment
MF GO:0008173 RNA methyltransferase activity IEP Enrichment
MF GO:0008175 tRNA methyltransferase activity IEP Enrichment
MF GO:0008757 S-adenosylmethionine-dependent methyltransferase activity IEP Enrichment
BP GO:0009059 macromolecule biosynthetic process IEP Enrichment
MF GO:0016423 tRNA (guanine) methyltransferase activity IEP Enrichment
MF GO:0016597 amino acid binding IEP Enrichment
MF GO:0016741 transferase activity, transferring one-carbon groups IEP Enrichment
MF GO:0016743 carboxyl- or carbamoyltransferase activity IEP Enrichment
MF GO:0016779 nucleotidyltransferase activity IEP Enrichment
CC GO:0030684 preribosome IEP Enrichment
CC GO:0032040 small-subunit processome IEP Enrichment
BP GO:0032774 RNA biosynthetic process IEP Enrichment
MF GO:0034062 5'-3' RNA polymerase activity IEP Enrichment
BP GO:0034645 cellular macromolecule biosynthetic process IEP Enrichment
MF GO:0043177 organic acid binding IEP Enrichment
CC GO:0043226 organelle IEP Enrichment
CC GO:0043227 membrane-bounded organelle IEP Enrichment
CC GO:0043228 non-membrane-bounded organelle IEP Enrichment
CC GO:0043229 intracellular organelle IEP Enrichment
CC GO:0043231 intracellular membrane-bounded organelle IEP Enrichment
CC GO:0043232 intracellular non-membrane-bounded organelle IEP Enrichment
MF GO:0097159 organic cyclic compound binding IEP Enrichment
BP GO:0097659 nucleic acid-templated transcription IEP Enrichment
MF GO:0097747 RNA polymerase activity IEP Enrichment
CC GO:0110165 cellular anatomical entity IEP Enrichment
MF GO:0140098 catalytic activity, acting on RNA IEP Enrichment
MF GO:1901363 heterocyclic compound binding IEP Enrichment
CC GO:1990904 ribonucleoprotein complex IEP Enrichment
InterPro domains Description Start Stop
IPR013949 Utp6 9 91
No external refs found!