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  5. lcl|LHPG02000015.1_cds_PRW33949.1_2946

lcl|LHPG02000015.1_cds_PRW33949.1_2946 (PRW33949)


Aliases : PRW33949

Description : ABC transporter isoform A


Gene families : OG_01_0000039 (OrthoFinder) Phylogenetic Tree(s): OG0000039_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: lcl|LHPG02000015.1_cds_PRW33949.1_2946
Cluster HCCA: Cluster_78

Target Alias Description ECC score Gene Family Method Actions
Cpa|evm.model.tig00000133.22 tig00000133_g7683.t1 ABC transporter C family member 7 OS=Arabidopsis thaliana 0.02 OrthoFinder
Cpa|evm.model.tig00000718.1 tig00000718_g3679.t1 ABC transporter C family member 2 OS=Arabidopsis thaliana 0.03 OrthoFinder
Cpa|evm.model.tig00000718.2 tig00000718_g3679.t1 ABC transporter C family member 2 OS=Arabidopsis thaliana 0.02 OrthoFinder
Cpa|evm.model.tig00001729.6 tig00001729_g9740.t1 Solute transport.primary active transport.ABC... 0.02 OrthoFinder
Cpa|evm.model.tig00020553.190 tig00020553_g10680.t1 ABC transporter C family member 4 OS=Arabidopsis thaliana 0.02 OrthoFinder
Cpa|evm.model.tig00020553.191 tig00020553_g10681.t1 ABC transporter C family member 11 OS=Arabidopsis thaliana 0.02 OrthoFinder
Cpa|evm.model.tig00020592.4 tig00020592_g11633.t1 ABC transporter C family member 1 OS=Arabidopsis thaliana 0.02 OrthoFinder
Cpa|evm.model.tig00020723.5 tig00020723_g13424.t1 ABC transporter C family member 13 OS=Arabidopsis thaliana 0.03 OrthoFinder
Cre02.g103250 30785465, MRP5 Solute transport.primary active transport.ABC... 0.02 OrthoFinder
Dusal.0432s00003.1 33197469 ABC transporter-like; ABC transporter type 1,... 0.02 OrthoFinder
EOD08599 No alias ABC transporter type 1, transmembrane domain; ABC... 0.03 OrthoFinder
EOD12193 No alias ABC transporter-like [Interproscan]. 0.02 OrthoFinder
Transcript_contig_17 17 ABC transporter type 1, transmembrane domain; ABC... 0.02 OrthoFinder
Vocar.0026s0119.1 32892596 ABC transporter-like; ABC transporter type 1,... 0.03 OrthoFinder
lcl|BLLF01000878.1_cds_GFH15643.1_10120 HaLaN_11904, GFH15643 ATP-binding cassette transporter 0.02 OrthoFinder
lcl|BLLF01003175.1_cds_GFH26596.1_21073 HaLaN_24770, GFH26596 ABC transporter type 1, transmembrane domain; ABC... 0.02 OrthoFinder

Type GO Term Name Evidence Source
MF GO:0005524 ATP binding IEA Interproscan
CC GO:0016021 integral component of membrane IEA Interproscan
MF GO:0016887 ATPase IEA Interproscan
MF GO:0042626 ATPase-coupled transmembrane transporter activity IEA Interproscan
BP GO:0055085 transmembrane transport IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0004556 alpha-amylase activity IEP Enrichment
MF GO:0008649 rRNA methyltransferase activity IEP Enrichment
MF GO:0016160 amylase activity IEP Enrichment
MF GO:0016787 hydrolase activity IEP Enrichment
MF GO:0030151 molybdenum ion binding IEP Enrichment
MF GO:0140102 catalytic activity, acting on a rRNA IEP Enrichment
InterPro domains Description Start Stop
IPR003439 ABC_transporter-like_ATP-bd 1277 1426
IPR011527 ABC1_TM_dom 175 440
IPR011527 ABC1_TM_dom 943 1203
IPR003439 ABC_transporter-like_ATP-bd 505 639
No external refs found!