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  5. lcl|LHPG02000014.1_cds_PRW39207.1_2689

lcl|LHPG02000014.1_cds_PRW39207.1_2689 (PRW39207)


Aliases : PRW39207

Description : Long-chain-fatty-acid-ligase


Gene families : OG_01_0000081 (OrthoFinder) Phylogenetic Tree(s): OG0000081_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: lcl|LHPG02000014.1_cds_PRW39207.1_2689
Cluster HCCA: Cluster_1

Target Alias Description ECC score Gene Family Method Actions
Cpa|evm.model.tig00021070.14 tig00021070_g17822.t1 Malonate--CoA ligase OS=Arabidopsis thaliana 0.02 OrthoFinder
Transcript_contig_58430 58430 AMP-dependent synthetase/ligase; AMP-binding enzyme,... 0.03 OrthoFinder
XM_003054995.1 MicpuC2_24314, 24314 AMP-binding enzyme, C-terminal domain; AMP-dependent... 0.02 OrthoFinder

Type GO Term Name Evidence Source
MF GO:0003824 catalytic activity IEA Interproscan
BP GO:0044238 primary metabolic process IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0003779 actin binding IEP Enrichment
MF GO:0003872 6-phosphofructokinase activity IEP Enrichment
MF GO:0004252 serine-type endopeptidase activity IEP Enrichment
BP GO:0007010 cytoskeleton organization IEP Enrichment
MF GO:0008236 serine-type peptidase activity IEP Enrichment
MF GO:0008443 phosphofructokinase activity IEP Enrichment
MF GO:0017171 serine hydrolase activity IEP Enrichment
MF GO:0019200 carbohydrate kinase activity IEP Enrichment
MF GO:0050661 NADP binding IEP Enrichment
InterPro domains Description Start Stop
IPR003489 RHF/RaiA 762 863
IPR025110 AMP-bd_C 1414 1489
IPR000873 AMP-dep_Synth/Lig 982 1405
IPR032528 Ribosom_S30AE_C 905 957
No external refs found!