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  5. lcl|LHPG02000013.1_cds_PRW44628.1_2401

lcl|LHPG02000013.1_cds_PRW44628.1_2401 (PRW44628)


Aliases : PRW44628

Description : Carotene isomerase


Gene families : OG_01_0000207 (OrthoFinder) Phylogenetic Tree(s): OG0000207_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: lcl|LHPG02000013.1_cds_PRW44628.1_2401
Cluster HCCA: Cluster_100

Target Alias Description ECC score Gene Family Method Actions
Cz12g03260.t1 No alias Amine oxidase [Interproscan]. 0.02 OrthoFinder
Dusal.0111s00019.1 33199801 Amine oxidase [Interproscan]. 0.03 OrthoFinder
Sro1649_g288630.1 Contig3529.g27273 Prolycopene isomerase, chloroplastic 0.02 OrthoFinder
TP05G02600.1 No alias Amine oxidase [Interproscan]. 0.01 OrthoFinder
Transcript_contig_78738 78738 Hypothetical protein 0.02 OrthoFinder

Type GO Term Name Evidence Source
MF GO:0016491 oxidoreductase activity IEA Interproscan
BP GO:0055114 obsolete oxidation-reduction process IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0000702 oxidized base lesion DNA N-glycosylase activity IEP Enrichment
MF GO:0003880 protein C-terminal carboxyl O-methyltransferase activity IEP Enrichment
MF GO:0004671 protein C-terminal S-isoprenylcysteine carboxyl O-methyltransferase activity IEP Enrichment
CC GO:0005750 mitochondrial respiratory chain complex III IEP Enrichment
BP GO:0006122 mitochondrial electron transport, ubiquinol to cytochrome c IEP Enrichment
BP GO:0006479 protein methylation IEP Enrichment
BP GO:0006481 C-terminal protein methylation IEP Enrichment
BP GO:0006891 intra-Golgi vesicle-mediated transport IEP Enrichment
MF GO:0008080 N-acetyltransferase activity IEP Enrichment
BP GO:0008213 protein alkylation IEP Enrichment
MF GO:0008276 protein methyltransferase activity IEP Enrichment
MF GO:0008534 oxidized purine nucleobase lesion DNA N-glycosylase activity IEP Enrichment
BP GO:0009060 aerobic respiration IEP Enrichment
MF GO:0010340 carboxyl-O-methyltransferase activity IEP Enrichment
BP GO:0015980 energy derivation by oxidation of organic compounds IEP Enrichment
MF GO:0016407 acetyltransferase activity IEP Enrichment
MF GO:0016410 N-acyltransferase activity IEP Enrichment
MF GO:0016746 acyltransferase activity IEP Enrichment
MF GO:0016747 acyltransferase activity, transferring groups other than amino-acyl groups IEP Enrichment
MF GO:0016799 hydrolase activity, hydrolyzing N-glycosyl compounds IEP Enrichment
CC GO:0017119 Golgi transport complex IEP Enrichment
BP GO:0018410 C-terminal protein amino acid modification IEP Enrichment
MF GO:0019104 DNA N-glycosylase activity IEP Enrichment
BP GO:0019646 aerobic electron transport chain IEP Enrichment
BP GO:0022900 electron transport chain IEP Enrichment
BP GO:0022904 respiratory electron transport chain IEP Enrichment
BP GO:0030163 protein catabolic process IEP Enrichment
BP GO:0043687 post-translational protein modification IEP Enrichment
CC GO:0045275 respiratory chain complex III IEP Enrichment
BP GO:0045333 cellular respiration IEP Enrichment
MF GO:0051998 protein carboxyl O-methyltransferase activity IEP Enrichment
CC GO:0070069 cytochrome complex IEP Enrichment
CC GO:0098803 respiratory chain complex IEP Enrichment
InterPro domains Description Start Stop
IPR002937 Amino_oxidase 133 621
IPR008579 UGlyAH_Cupin_3_dom 21 88
IPR020683 Ankyrin_rpt-contain_dom 646 738
IPR020683 Ankyrin_rpt-contain_dom 745 834
No external refs found!