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  5. Cpa|evm.model.tig00000553.19

Cpa|evm.model.tig00000553.19 (tig00000553_g2090.t1)


Aliases : tig00000553_g2090.t1

Description : FACT complex subunit SSRP1 OS=Vicia faba


Gene families : OG_01_0000118 (OrthoFinder) Phylogenetic Tree(s): OG0000118_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Cpa|evm.model.tig00000553.19
Cluster HCCA: Cluster_156

Target Alias Description ECC score Gene Family Method Actions
Cre16.g672300 30777735 No description available 0.02 OrthoFinder
Dusal.0407s00007.1 33197894 High mobility group box domain [Interproscan]. 0.02 OrthoFinder
EOD15543 No alias Protein kinase domain; High mobility group box domain... 0.03 OrthoFinder
EOD20010 No alias High mobility group box domain [Interproscan]. 0.02 OrthoFinder
EOD23284 No alias High mobility group box domain [Interproscan]. 0.02 OrthoFinder
OT_08G01340.1 No alias High mobility group box domain [Interproscan]. 0.02 OrthoFinder
OT_15G02920.1 No alias High mobility group box domain [Interproscan]. 0.01 OrthoFinder
OT_17G00820.1 No alias DEK, C-terminal; High mobility group box domain;... 0.03 OrthoFinder
Vocar.0002s0492.1 32891006 High mobility group box domain [Interproscan]. 0.03 OrthoFinder
XM_002508518.1 MICPUN_106177, 106177 Animal specific-mbd4, 5 and 6 0.02 OrthoFinder
XM_003060405.1 MicpuC2_60282, 60282 High mobility group family B protein 0.04 OrthoFinder

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0003916 DNA topoisomerase activity IEP Enrichment
MF GO:0003918 DNA topoisomerase type II (double strand cut, ATP-hydrolyzing) activity IEP Enrichment
MF GO:0004615 phosphomannomutase activity IEP Enrichment
CC GO:0005634 nucleus IEP Enrichment
BP GO:0006260 DNA replication IEP Enrichment
BP GO:0006401 RNA catabolic process IEP Enrichment
MF GO:0016853 isomerase activity IEP Enrichment
MF GO:0016866 intramolecular transferase activity IEP Enrichment
MF GO:0016868 intramolecular transferase activity, phosphotransferases IEP Enrichment
BP GO:0019439 aromatic compound catabolic process IEP Enrichment
BP GO:0034655 nucleobase-containing compound catabolic process IEP Enrichment
CC GO:0043226 organelle IEP Enrichment
CC GO:0043227 membrane-bounded organelle IEP Enrichment
CC GO:0043229 intracellular organelle IEP Enrichment
CC GO:0043231 intracellular membrane-bounded organelle IEP Enrichment
BP GO:0044270 cellular nitrogen compound catabolic process IEP Enrichment
BP GO:0046700 heterocycle catabolic process IEP Enrichment
BP GO:1901361 organic cyclic compound catabolic process IEP Enrichment
InterPro domains Description Start Stop
IPR009071 HMG_box_dom 700 770
No external refs found!