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  5. lcl|LHPG02000012.1_cds_PRW45236.1_1796

lcl|LHPG02000012.1_cds_PRW45236.1_1796 (PRW45236)


Aliases : PRW45236

Description : DNA-directed RNA polymerase I subunit rpa43 isoform X1


Gene families : OG_01_0004371 (OrthoFinder) Phylogenetic Tree(s): OG0004371_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: lcl|LHPG02000012.1_cds_PRW45236.1_1796
Cluster HCCA: Cluster_80

Target Alias Description ECC score Gene Family Method Actions
Cpa|evm.model.tig00020675.101 tig00020675_g12683.t1 No description available 0.06 OrthoFinder
Cre02.g086750 30786081 No description available 0.17 OrthoFinder
Cz03g36140.t1 No alias Hypothetical protein 0.06 OrthoFinder
EOD33131 No alias RNA polymerase Rpb7-like , N-terminal [Interproscan]. 0.02 OrthoFinder
OT_14G01780.1 No alias RNA polymerase Rpb7-like , N-terminal [Interproscan]. 0.05 OrthoFinder
Vocar.0004s0440.1 32889547 RNA polymerase Rpb7-like , N-terminal; RPA43, OB domain... 0.04 OrthoFinder
XM_002505607.1 MICPUN_103668, 103668 RNA polymerase Rpb7-like , N-terminal [Interproscan]. 0.14 OrthoFinder
XM_003059924.1 MicpuC2_40447, 40447 RNA polymerase Rpb7-like , N-terminal [Interproscan]. 0.08 OrthoFinder

Type GO Term Name Evidence Source
BP GO:0006351 transcription, DNA-templated IEA Interproscan
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Type GO Term Name Evidence Source
CC GO:0000151 ubiquitin ligase complex IEP Enrichment
CC GO:0000152 nuclear ubiquitin ligase complex IEP Enrichment
BP GO:0000462 maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) IEP Enrichment
MF GO:0003674 molecular_function IEP Enrichment
MF GO:0003676 nucleic acid binding IEP Enrichment
MF GO:0003723 RNA binding IEP Enrichment
MF GO:0005319 lipid transporter activity IEP Enrichment
MF GO:0005488 binding IEP Enrichment
MF GO:0005515 protein binding IEP Enrichment
MF GO:0005542 folic acid binding IEP Enrichment
CC GO:0005634 nucleus IEP Enrichment
CC GO:0005680 anaphase-promoting complex IEP Enrichment
CC GO:0005730 nucleolus IEP Enrichment
BP GO:0006364 rRNA processing IEP Enrichment
BP GO:0006396 RNA processing IEP Enrichment
BP GO:0006869 lipid transport IEP Enrichment
BP GO:0007346 regulation of mitotic cell cycle IEP Enrichment
MF GO:0008168 methyltransferase activity IEP Enrichment
BP GO:0010965 regulation of mitotic sister chromatid separation IEP Enrichment
BP GO:0016072 rRNA metabolic process IEP Enrichment
MF GO:0016741 transferase activity, transferring one-carbon groups IEP Enrichment
BP GO:0022613 ribonucleoprotein complex biogenesis IEP Enrichment
BP GO:0030071 regulation of mitotic metaphase/anaphase transition IEP Enrichment
BP GO:0030490 maturation of SSU-rRNA IEP Enrichment
MF GO:0030515 snoRNA binding IEP Enrichment
CC GO:0030684 preribosome IEP Enrichment
CC GO:0030688 preribosome, small subunit precursor IEP Enrichment
MF GO:0031406 carboxylic acid binding IEP Enrichment
CC GO:0031461 cullin-RING ubiquitin ligase complex IEP Enrichment
CC GO:0032040 small-subunit processome IEP Enrichment
BP GO:0033043 regulation of organelle organization IEP Enrichment
BP GO:0033044 regulation of chromosome organization IEP Enrichment
BP GO:0033045 regulation of sister chromatid segregation IEP Enrichment
BP GO:0034470 ncRNA processing IEP Enrichment
BP GO:0034660 ncRNA metabolic process IEP Enrichment
BP GO:0042254 ribosome biogenesis IEP Enrichment
BP GO:0042274 ribosomal small subunit biogenesis IEP Enrichment
MF GO:0043177 organic acid binding IEP Enrichment
CC GO:0043226 organelle IEP Enrichment
CC GO:0043227 membrane-bounded organelle IEP Enrichment
CC GO:0043229 intracellular organelle IEP Enrichment
CC GO:0043231 intracellular membrane-bounded organelle IEP Enrichment
BP GO:0044085 cellular component biogenesis IEP Enrichment
BP GO:0051983 regulation of chromosome segregation IEP Enrichment
BP GO:0061024 membrane organization IEP Enrichment
BP GO:0071840 cellular component organization or biogenesis IEP Enrichment
MF GO:0072341 modified amino acid binding IEP Enrichment
MF GO:0097159 organic cyclic compound binding IEP Enrichment
BP GO:0120009 intermembrane lipid transfer IEP Enrichment
MF GO:0120013 lipid transfer activity IEP Enrichment
MF GO:1901363 heterocyclic compound binding IEP Enrichment
BP GO:1901990 regulation of mitotic cell cycle phase transition IEP Enrichment
BP GO:1902099 regulation of metaphase/anaphase transition of cell cycle IEP Enrichment
BP GO:1905818 regulation of chromosome separation IEP Enrichment
CC GO:1990904 ribonucleoprotein complex IEP Enrichment
InterPro domains Description Start Stop
IPR005576 Rpb7-like_N 11 79
No external refs found!