lcl|LHPG02000012.1_cds_PRW45112.1_1697 (PRW45112)


Aliases : PRW45112

Description : 40S ribosomal S23


Gene families : OG_01_0004164 (OrthoFinder) Phylogenetic Tree(s): OG0004164_tree

Sequence : coding (download), protein (download)


Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: lcl|LHPG02000012.1_cds_PRW45112.1_1697
Cluster HCCA: Cluster_23

Target Alias Description ECC score Gene Family Method Actions
Cpa|evm.model.tig00001264.27 tig00001264_g7883.t1 Protein biosynthesis.cytosolic ribosome.small subunit... 0.12 OrthoFinder
Cre12.g504200 30792072, RPS23 Protein biosynthesis.cytosolic ribosome.small subunit... 0.22 OrthoFinder
Cz02g32260.t1 No alias Ribosomal protein S12/S23 [Interproscan]. 0.16 OrthoFinder
Dusal.0029s00015.1 33203771 Ribosomal protein S12/S23 [Interproscan]. 0.13 OrthoFinder
EOD07302 No alias Ribosomal protein S12/S23 [Interproscan]. 0.12 OrthoFinder
EOD33195 No alias Ribosomal protein S12/S23 [Interproscan]. 0.12 OrthoFinder
OT_06G01850.1 No alias Ribosomal protein S12/S23 [Interproscan]. 0.03 OrthoFinder
PTI_02G00080.1 No alias Ribosomal protein S12/S23 [Interproscan]. 0.2 OrthoFinder
Sro922_g220630.1 Contig2958.g23506 40S ribosomal protein S23 0.21 OrthoFinder
SymbC1.scaffold7066.3 7066.3 Ribosomal protein S12/S23 [Interproscan]. 0.02 OrthoFinder
TP05G01460.1 No alias Ribosomal protein S12/S23 [Interproscan]. 0.2 OrthoFinder
XM_002499719.1 MICPUN_89912, 89912 Ribosomal protein S12/S23 [Interproscan]. 0.2 OrthoFinder
XM_003062101.1 MicpuC2_48397, 48397 Ribosomal protein S12/S23 [Interproscan]. 0.13 OrthoFinder
lcl|VRMN01000002.1_cds_KAA8497390.1_1119 KAA8497390 40S ribosomal protein S23 0.13 OrthoFinder

Type GO Term Name Evidence Source
MF GO:0003735 structural constituent of ribosome IEA Interproscan
CC GO:0005840 ribosome IEA Interproscan
BP GO:0006412 translation IEA Interproscan
Type GO Term Name Evidence Source
MF GO:0004392 heme oxygenase (decyclizing) activity IEP Enrichment
MF GO:0004402 histone acetyltransferase activity IEP Enrichment
MF GO:0004565 beta-galactosidase activity IEP Enrichment
MF GO:0004619 phosphoglycerate mutase activity IEP Enrichment
MF GO:0005215 transporter activity IEP Enrichment
MF GO:0005315 inorganic phosphate transmembrane transporter activity IEP Enrichment
CC GO:0005737 cytoplasm IEP Enrichment
BP GO:0005975 carbohydrate metabolic process IEP Enrichment
BP GO:0005996 monosaccharide metabolic process IEP Enrichment
BP GO:0006006 glucose metabolic process IEP Enrichment
BP GO:0006007 glucose catabolic process IEP Enrichment
BP GO:0006359 regulation of transcription by RNA polymerase III IEP Enrichment
BP GO:0006658 phosphatidylserine metabolic process IEP Enrichment
BP GO:0006659 phosphatidylserine biosynthetic process IEP Enrichment
BP GO:0006788 heme oxidation IEP Enrichment
BP GO:0006811 ion transport IEP Enrichment
BP GO:0006817 phosphate ion transport IEP Enrichment
BP GO:0006820 anion transport IEP Enrichment
BP GO:0006873 cellular ion homeostasis IEP Enrichment
BP GO:0006875 cellular metal ion homeostasis IEP Enrichment
BP GO:0006879 cellular iron ion homeostasis IEP Enrichment
CC GO:0009341 beta-galactosidase complex IEP Enrichment
MF GO:0009678 pyrophosphate hydrolysis-driven proton transmembrane transporter activity IEP Enrichment
BP GO:0009890 negative regulation of biosynthetic process IEP Enrichment
BP GO:0010558 negative regulation of macromolecule biosynthetic process IEP Enrichment
MF GO:0015267 channel activity IEP Enrichment
MF GO:0015291 secondary active transmembrane transporter activity IEP Enrichment
MF GO:0015318 inorganic molecular entity transmembrane transporter activity IEP Enrichment
BP GO:0015698 inorganic anion transport IEP Enrichment
MF GO:0015925 galactosidase activity IEP Enrichment
CC GO:0015934 large ribosomal subunit IEP Enrichment
CC GO:0016020 membrane IEP Enrichment
BP GO:0016052 carbohydrate catabolic process IEP Enrichment
BP GO:0016480 negative regulation of transcription by RNA polymerase III IEP Enrichment
MF GO:0016866 intramolecular transferase activity IEP Enrichment
MF GO:0016868 intramolecular transferase activity, phosphotransferases IEP Enrichment
BP GO:0019318 hexose metabolic process IEP Enrichment
BP GO:0019320 hexose catabolic process IEP Enrichment
MF GO:0022803 passive transmembrane transporter activity IEP Enrichment
MF GO:0022804 active transmembrane transporter activity IEP Enrichment
MF GO:0022857 transmembrane transporter activity IEP Enrichment
BP GO:0030003 cellular cation homeostasis IEP Enrichment
MF GO:0030145 manganese ion binding IEP Enrichment
CC GO:0030286 dynein complex IEP Enrichment
BP GO:0031324 negative regulation of cellular metabolic process IEP Enrichment
BP GO:0031327 negative regulation of cellular biosynthetic process IEP Enrichment
MF GO:0034212 peptide N-acetyltransferase activity IEP Enrichment
BP GO:0042168 heme metabolic process IEP Enrichment
BP GO:0044282 small molecule catabolic process IEP Enrichment
CC GO:0044391 ribosomal subunit IEP Enrichment
MF GO:0045735 nutrient reservoir activity IEP Enrichment
BP GO:0045892 negative regulation of transcription, DNA-templated IEP Enrichment
BP GO:0045934 negative regulation of nucleobase-containing compound metabolic process IEP Enrichment
BP GO:0046365 monosaccharide catabolic process IEP Enrichment
MF GO:0046914 transition metal ion binding IEP Enrichment
BP GO:0046916 cellular transition metal ion homeostasis IEP Enrichment
BP GO:0051172 negative regulation of nitrogen compound metabolic process IEP Enrichment
BP GO:0051253 negative regulation of RNA metabolic process IEP Enrichment
BP GO:0055072 iron ion homeostasis IEP Enrichment
BP GO:0055082 cellular chemical homeostasis IEP Enrichment
MF GO:0061733 peptide-lysine-N-acetyltransferase activity IEP Enrichment
BP GO:1902679 negative regulation of RNA biosynthetic process IEP Enrichment
BP GO:1903507 negative regulation of nucleic acid-templated transcription IEP Enrichment
BP GO:2000113 negative regulation of cellular macromolecule biosynthetic process IEP Enrichment
InterPro domains Description Start Stop
IPR006032 Ribosomal_S12/S23 31 141
No external refs found!