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  5. lcl|LHPG02000012.1_cds_PRW44868.1_1694

lcl|LHPG02000012.1_cds_PRW44868.1_1694 (PRW44868)


Aliases : PRW44868

Description : MATE efflux family


Gene families : OG_01_0000073 (OrthoFinder) Phylogenetic Tree(s): OG0000073_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: lcl|LHPG02000012.1_cds_PRW44868.1_1694
Cluster HCCA: Cluster_7

Target Alias Description ECC score Gene Family Method Actions
Cz16g21310.t1 No alias Multi antimicrobial extrusion protein [Interproscan]. 0.03 OrthoFinder
EOD24771 No alias Polysaccharide biosynthesis protein, C-terminal domain... 0.02 OrthoFinder
EOD33807 No alias Multi antimicrobial extrusion protein [Interproscan]. 0.02 OrthoFinder
Sro49_g028880.1 Contig2054.g17638 Protein DETOXIFICATION 0.02 OrthoFinder
Sro65_g036730.1 Contig155.g1743 Protein DETOXIFICATION 0.01 OrthoFinder
SymbC1.scaffold2070.3 2070.3 Multi antimicrobial extrusion protein [Interproscan]. 0.01 OrthoFinder
Transcript_contig_53708 53708 Multi antimicrobial extrusion protein [Interproscan]. 0.01 OrthoFinder
lcl|BLLF01002227.1_cds_GFH23247.1_17724 HaLaN_20836, GFH23247 Multidrug and toxic compound extrusion protein 0.02 OrthoFinder

Type GO Term Name Evidence Source
MF GO:0015297 antiporter activity IEA Interproscan
CC GO:0016020 membrane IEA Interproscan
MF GO:0042910 xenobiotic transmembrane transporter activity IEA Interproscan
BP GO:0055085 transmembrane transport IEA Interproscan
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Type GO Term Name Evidence Source
CC GO:0000151 ubiquitin ligase complex IEP Enrichment
CC GO:0000152 nuclear ubiquitin ligase complex IEP Enrichment
MF GO:0000774 adenyl-nucleotide exchange factor activity IEP Enrichment
MF GO:0003676 nucleic acid binding IEP Enrichment
MF GO:0003872 6-phosphofructokinase activity IEP Enrichment
MF GO:0003885 D-arabinono-1,4-lactone oxidase activity IEP Enrichment
MF GO:0004540 ribonuclease activity IEP Enrichment
CC GO:0005680 anaphase-promoting complex IEP Enrichment
BP GO:0006020 inositol metabolic process IEP Enrichment
BP GO:0006396 RNA processing IEP Enrichment
BP GO:0007346 regulation of mitotic cell cycle IEP Enrichment
MF GO:0008443 phosphofructokinase activity IEP Enrichment
BP GO:0009056 catabolic process IEP Enrichment
BP GO:0010498 proteasomal protein catabolic process IEP Enrichment
BP GO:0010564 regulation of cell cycle process IEP Enrichment
BP GO:0010965 regulation of mitotic sister chromatid separation IEP Enrichment
BP GO:0016052 carbohydrate catabolic process IEP Enrichment
MF GO:0016307 phosphatidylinositol phosphate kinase activity IEP Enrichment
MF GO:0016788 hydrolase activity, acting on ester bonds IEP Enrichment
MF GO:0016899 oxidoreductase activity, acting on the CH-OH group of donors, oxygen as acceptor IEP Enrichment
MF GO:0019200 carbohydrate kinase activity IEP Enrichment
BP GO:0019310 inositol catabolic process IEP Enrichment
BP GO:0030071 regulation of mitotic metaphase/anaphase transition IEP Enrichment
BP GO:0030163 protein catabolic process IEP Enrichment
BP GO:0031145 anaphase-promoting complex-dependent catabolic process IEP Enrichment
CC GO:0031461 cullin-RING ubiquitin ligase complex IEP Enrichment
BP GO:0033043 regulation of organelle organization IEP Enrichment
BP GO:0033044 regulation of chromosome organization IEP Enrichment
BP GO:0033045 regulation of sister chromatid segregation IEP Enrichment
MF GO:0042802 identical protein binding IEP Enrichment
MF GO:0042803 protein homodimerization activity IEP Enrichment
MF GO:0043015 gamma-tubulin binding IEP Enrichment
BP GO:0043161 proteasome-mediated ubiquitin-dependent protein catabolic process IEP Enrichment
BP GO:0044248 cellular catabolic process IEP Enrichment
BP GO:0044275 cellular carbohydrate catabolic process IEP Enrichment
BP GO:0046164 alcohol catabolic process IEP Enrichment
BP GO:0046174 polyol catabolic process IEP Enrichment
MF GO:0050113 inositol oxygenase activity IEP Enrichment
MF GO:0051087 chaperone binding IEP Enrichment
BP GO:0051128 regulation of cellular component organization IEP Enrichment
BP GO:0051983 regulation of chromosome segregation IEP Enrichment
MF GO:0060590 ATPase regulator activity IEP Enrichment
MF GO:0140098 catalytic activity, acting on RNA IEP Enrichment
BP GO:1901575 organic substance catabolic process IEP Enrichment
BP GO:1901616 organic hydroxy compound catabolic process IEP Enrichment
BP GO:1901987 regulation of cell cycle phase transition IEP Enrichment
BP GO:1901990 regulation of mitotic cell cycle phase transition IEP Enrichment
BP GO:1902099 regulation of metaphase/anaphase transition of cell cycle IEP Enrichment
BP GO:1905818 regulation of chromosome separation IEP Enrichment
InterPro domains Description Start Stop
IPR008507 DUF789 1150 1220
IPR008507 DUF789 1255 1347
IPR002528 MATE_fam 289 424
IPR002528 MATE_fam 63 220
No external refs found!