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  5. lcl|LHPG02000009.1_cds_PRW56214.1_10041

lcl|LHPG02000009.1_cds_PRW56214.1_10041 (PRW56214)


Aliases : PRW56214

Description : Biotin carboxylase chloroplastic


Gene families : OG_01_0000176 (OrthoFinder) Phylogenetic Tree(s): OG0000176_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: lcl|LHPG02000009.1_cds_PRW56214.1_10041
Cluster HCCA: Cluster_8

Target Alias Description ECC score Gene Family Method Actions
Cre06.g258700 30779562, PYC1 Enzyme classification.EC_6 ligases.EC_6.4 ligase forming... 0.02 OrthoFinder
Cre08.g359350 30773866 Lipid metabolism.fatty acid synthesis.acetyl-CoA... 0.08 OrthoFinder
Cz13g10110.t1 No alias Carbamoyl-phosphate synthetase large subunit-like,... 0.06 OrthoFinder
Dusal.0217s00015.1 33197553 Pyruvate carboxyltransferase; Biotin carboxylase-like,... 0.03 OrthoFinder
PTI_21G02660.1 No alias Biotin/lipoyl attachment; Biotin carboxylase-like,... 0.03 OrthoFinder
Sro803_g204800.1 Contig386.g5194 Pyruvate carboxylase 0.02 OrthoFinder
Transcript_contig_89882 89882 Biotin carboxylase, C-terminal; Biotin carboxylase-like,... 0.04 OrthoFinder
Vocar.0003s0267.1 32888830 Biotin carboxylase-like, N-terminal domain; Biotin... 0.04 OrthoFinder
XM_002503301.1 MICPUN_96455, 96455 Pyruvate carboyxlase (PYC) 0.02 OrthoFinder
lcl|BLLF01000208.1_cds_GFH09088.1_3565 HaLaN_04167, GFH09088 Biotin carboxylase 0.07 OrthoFinder

Type GO Term Name Evidence Source
MF GO:0005524 ATP binding IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0000287 magnesium ion binding IEP Enrichment
MF GO:0003824 catalytic activity IEP Enrichment
MF GO:0004743 pyruvate kinase activity IEP Enrichment
MF GO:0004779 sulfate adenylyltransferase activity IEP Enrichment
MF GO:0004781 sulfate adenylyltransferase (ATP) activity IEP Enrichment
MF GO:0005048 signal sequence binding IEP Enrichment
CC GO:0005786 signal recognition particle, endoplasmic reticulum targeting IEP Enrichment
BP GO:0006090 pyruvate metabolic process IEP Enrichment
BP GO:0006091 generation of precursor metabolites and energy IEP Enrichment
BP GO:0006096 glycolytic process IEP Enrichment
BP GO:0006163 purine nucleotide metabolic process IEP Enrichment
BP GO:0006165 nucleoside diphosphate phosphorylation IEP Enrichment
BP GO:0006364 rRNA processing IEP Enrichment
BP GO:0006605 protein targeting IEP Enrichment
BP GO:0006612 protein targeting to membrane IEP Enrichment
BP GO:0006613 cotranslational protein targeting to membrane IEP Enrichment
BP GO:0006614 SRP-dependent cotranslational protein targeting to membrane IEP Enrichment
BP GO:0006753 nucleoside phosphate metabolic process IEP Enrichment
BP GO:0006757 ATP generation from ADP IEP Enrichment
MF GO:0008312 7S RNA binding IEP Enrichment
BP GO:0009056 catabolic process IEP Enrichment
BP GO:0009117 nucleotide metabolic process IEP Enrichment
BP GO:0009132 nucleoside diphosphate metabolic process IEP Enrichment
BP GO:0009135 purine nucleoside diphosphate metabolic process IEP Enrichment
BP GO:0009150 purine ribonucleotide metabolic process IEP Enrichment
BP GO:0009179 purine ribonucleoside diphosphate metabolic process IEP Enrichment
BP GO:0009185 ribonucleoside diphosphate metabolic process IEP Enrichment
BP GO:0009259 ribonucleotide metabolic process IEP Enrichment
BP GO:0009894 regulation of catabolic process IEP Enrichment
BP GO:0010608 posttranscriptional regulation of gene expression IEP Enrichment
BP GO:0016052 carbohydrate catabolic process IEP Enrichment
BP GO:0016072 rRNA metabolic process IEP Enrichment
MF GO:0016491 oxidoreductase activity IEP Enrichment
MF GO:0016624 oxidoreductase activity, acting on the aldehyde or oxo group of donors, disulfide as acceptor IEP Enrichment
MF GO:0016903 oxidoreductase activity, acting on the aldehyde or oxo group of donors IEP Enrichment
BP GO:0019637 organophosphate metabolic process IEP Enrichment
BP GO:0019693 ribose phosphate metabolic process IEP Enrichment
CC GO:0030684 preribosome IEP Enrichment
MF GO:0030942 endoplasmic reticulum signal peptide binding IEP Enrichment
MF GO:0030955 potassium ion binding IEP Enrichment
BP GO:0031329 regulation of cellular catabolic process IEP Enrichment
MF GO:0031420 alkali metal ion binding IEP Enrichment
CC GO:0032040 small-subunit processome IEP Enrichment
BP GO:0032787 monocarboxylic acid metabolic process IEP Enrichment
MF GO:0033218 amide binding IEP Enrichment
BP GO:0033365 protein localization to organelle IEP Enrichment
BP GO:0034613 cellular protein localization IEP Enrichment
MF GO:0042277 peptide binding IEP Enrichment
MF GO:0043169 cation binding IEP Enrichment
BP GO:0043487 regulation of RNA stability IEP Enrichment
BP GO:0043488 regulation of mRNA stability IEP Enrichment
BP GO:0044528 regulation of mitochondrial mRNA stability IEP Enrichment
BP GO:0045047 protein targeting to ER IEP Enrichment
BP GO:0046031 ADP metabolic process IEP Enrichment
BP GO:0046034 ATP metabolic process IEP Enrichment
MF GO:0046872 metal ion binding IEP Enrichment
BP GO:0046939 nucleotide phosphorylation IEP Enrichment
CC GO:0048500 signal recognition particle IEP Enrichment
BP GO:0051668 localization within membrane IEP Enrichment
BP GO:0055085 transmembrane transport IEP Enrichment
BP GO:0055086 nucleobase-containing small molecule metabolic process IEP Enrichment
BP GO:0061013 regulation of mRNA catabolic process IEP Enrichment
BP GO:0065008 regulation of biological quality IEP Enrichment
MF GO:0070566 adenylyltransferase activity IEP Enrichment
BP GO:0070727 cellular macromolecule localization IEP Enrichment
BP GO:0070972 protein localization to endoplasmic reticulum IEP Enrichment
BP GO:0072521 purine-containing compound metabolic process IEP Enrichment
BP GO:0072594 establishment of protein localization to organelle IEP Enrichment
BP GO:0072599 establishment of protein localization to endoplasmic reticulum IEP Enrichment
BP GO:0072657 protein localization to membrane IEP Enrichment
BP GO:0090150 establishment of protein localization to membrane IEP Enrichment
BP GO:1901135 carbohydrate derivative metabolic process IEP Enrichment
BP GO:1901575 organic substance catabolic process IEP Enrichment
BP GO:1903311 regulation of mRNA metabolic process IEP Enrichment
InterPro domains Description Start Stop
IPR005479 CbamoylP_synth_lsu-like_ATP-bd 193 399
IPR005481 BC-like_N 80 188
IPR005482 Biotin_COase_C 413 518
No external refs found!