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  5. lcl|LHPG02000009.1_cds_PRW55969.1_10165

lcl|LHPG02000009.1_cds_PRW55969.1_10165 (PRW55969)


Aliases : PRW55969

Description : RNA binding rRNA processing


Gene families : OG_01_0001807 (OrthoFinder) Phylogenetic Tree(s): OG0001807_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: lcl|LHPG02000009.1_cds_PRW55969.1_10165
Cluster HCCA: Cluster_11

Target Alias Description ECC score Gene Family Method Actions
Cpa|evm.model.tig00000605.10 tig00000605_g2475.t1 Protein biosynthesis.cytosolic ribosome.small subunit... 0.07 OrthoFinder
Cpa|evm.model.tig00000605.11 tig00000605_g2478.t1 rRNA biogenesis protein RRP5 OS=Arabidopsis thaliana 0.08 OrthoFinder
Cre10.g428750 30790321 Protein biosynthesis.cytosolic ribosome.small subunit... 0.22 OrthoFinder
Cz01g27020.t1 No alias S1 domain; Suppressor of forked [Interproscan]. 0.17 OrthoFinder
EOD17851 No alias Suppressor of forked [Interproscan]. 0.12 OrthoFinder
OT_10G00010.1 No alias S1 domain; Suppressor of forked [Interproscan]. 0.02 OrthoFinder
PTI_19G01960.1 No alias S1 domain [Interproscan]. 0.12 OrthoFinder
Sro264_g102530.1 Contig921.g9679 Protein RRP5 0.15 OrthoFinder
TP17G00890.1 No alias Suppressor of forked [Interproscan]. 0.04 OrthoFinder
Transcript_contig_69303 69303 Hypothetical protein 0.06 OrthoFinder
Transcript_contig_78480 78480 S1 domain [Interproscan]. 0.08 OrthoFinder
Vocar.0005s0239.1 32883847 S1 domain; Suppressor of forked [Interproscan]. 0.05 OrthoFinder
XM_002504294.1 MICPUN_107434, 107434 Hypothetical protein (RRP5) 0.14 OrthoFinder
XM_003064819.1 MicpuC2_54811, 54811 Suppressor of forked; S1 domain [Interproscan]. 0.09 OrthoFinder
lcl|BLLF01003094.1_cds_GFH26329.1_20806 HaLaN_24462, GFH26329 Suppressor of forked [Interproscan]. 0.1 OrthoFinder
lcl|BLLF01003604.1_cds_GFH27756.1_22233 HaLaN_26132, GFH27756 Hypothetical protein 0.02 OrthoFinder
lcl|VRMN01000002.1_cds_KAA8497028.1_757 KAA8497028 RRNA biogenesis protein rrp5 0.06 OrthoFinder

Type GO Term Name Evidence Source
CC GO:0005634 nucleus IEA Interproscan
BP GO:0006397 mRNA processing IEA Interproscan
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Type GO Term Name Evidence Source
BP GO:0000462 maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) IEP Enrichment
MF GO:0003674 molecular_function IEP Enrichment
MF GO:0003676 nucleic acid binding IEP Enrichment
MF GO:0003723 RNA binding IEP Enrichment
MF GO:0003724 RNA helicase activity IEP Enrichment
MF GO:0003899 DNA-directed 5'-3' RNA polymerase activity IEP Enrichment
MF GO:0004359 glutaminase activity IEP Enrichment
MF GO:0004809 tRNA (guanine-N2-)-methyltransferase activity IEP Enrichment
MF GO:0005319 lipid transporter activity IEP Enrichment
MF GO:0005488 binding IEP Enrichment
MF GO:0005515 protein binding IEP Enrichment
MF GO:0005542 folic acid binding IEP Enrichment
CC GO:0005730 nucleolus IEP Enrichment
BP GO:0006081 cellular aldehyde metabolic process IEP Enrichment
BP GO:0006351 transcription, DNA-templated IEP Enrichment
BP GO:0006364 rRNA processing IEP Enrichment
BP GO:0006399 tRNA metabolic process IEP Enrichment
BP GO:0006869 lipid transport IEP Enrichment
BP GO:0008033 tRNA processing IEP Enrichment
MF GO:0008134 transcription factor binding IEP Enrichment
MF GO:0008170 N-methyltransferase activity IEP Enrichment
BP GO:0016072 rRNA metabolic process IEP Enrichment
MF GO:0016779 nucleotidyltransferase activity IEP Enrichment
MF GO:0017025 TBP-class protein binding IEP Enrichment
MF GO:0017150 tRNA dihydrouridine synthase activity IEP Enrichment
BP GO:0018130 heterocycle biosynthetic process IEP Enrichment
BP GO:0019438 aromatic compound biosynthetic process IEP Enrichment
BP GO:0022613 ribonucleoprotein complex biogenesis IEP Enrichment
BP GO:0030490 maturation of SSU-rRNA IEP Enrichment
MF GO:0030515 snoRNA binding IEP Enrichment
CC GO:0030684 preribosome IEP Enrichment
CC GO:0030688 preribosome, small subunit precursor IEP Enrichment
MF GO:0031406 carboxylic acid binding IEP Enrichment
CC GO:0032040 small-subunit processome IEP Enrichment
BP GO:0032774 RNA biosynthetic process IEP Enrichment
MF GO:0034062 5'-3' RNA polymerase activity IEP Enrichment
BP GO:0034470 ncRNA processing IEP Enrichment
BP GO:0034645 cellular macromolecule biosynthetic process IEP Enrichment
BP GO:0034654 nucleobase-containing compound biosynthetic process IEP Enrichment
BP GO:0034660 ncRNA metabolic process IEP Enrichment
BP GO:0042254 ribosome biogenesis IEP Enrichment
BP GO:0042274 ribosomal small subunit biogenesis IEP Enrichment
BP GO:0042816 vitamin B6 metabolic process IEP Enrichment
BP GO:0042819 vitamin B6 biosynthetic process IEP Enrichment
BP GO:0042822 pyridoxal phosphate metabolic process IEP Enrichment
BP GO:0042823 pyridoxal phosphate biosynthetic process IEP Enrichment
MF GO:0043168 anion binding IEP Enrichment
MF GO:0043177 organic acid binding IEP Enrichment
BP GO:0044085 cellular component biogenesis IEP Enrichment
BP GO:0046184 aldehyde biosynthetic process IEP Enrichment
MF GO:0046983 protein dimerization activity IEP Enrichment
BP GO:0061024 membrane organization IEP Enrichment
BP GO:0071840 cellular component organization or biogenesis IEP Enrichment
MF GO:0072341 modified amino acid binding IEP Enrichment
MF GO:0097159 organic cyclic compound binding IEP Enrichment
BP GO:0097659 nucleic acid-templated transcription IEP Enrichment
MF GO:0097747 RNA polymerase activity IEP Enrichment
BP GO:0120009 intermembrane lipid transfer IEP Enrichment
MF GO:0120013 lipid transfer activity IEP Enrichment
MF GO:0140098 catalytic activity, acting on RNA IEP Enrichment
MF GO:0140296 general transcription initiation factor binding IEP Enrichment
BP GO:1901362 organic cyclic compound biosynthetic process IEP Enrichment
MF GO:1901363 heterocyclic compound binding IEP Enrichment
CC GO:1990904 ribonucleoprotein complex IEP Enrichment
InterPro domains Description Start Stop
IPR008847 Suf 270 367
No external refs found!