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  5. lcl|LHPG02000008.1_cds_PRW56740.1_9705

lcl|LHPG02000008.1_cds_PRW56740.1_9705 (PRW56740)


Aliases : PRW56740

Description : Chromatin-remodeling complex ATPase chain


Gene families : OG_01_0000017 (OrthoFinder) Phylogenetic Tree(s): OG0000017_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: lcl|LHPG02000008.1_cds_PRW56740.1_9705
Cluster HCCA: Cluster_95

Target Alias Description ECC score Gene Family Method Actions
Cpa|evm.model.tig00000128.11 tig00000128_g7211.t1 ISWI chromatin-remodeling complex ATPase CHR17... 0.04 OrthoFinder
Cpa|evm.model.tig00000217.25 tig00000217_g19158.t1 Chromatin structure-remodeling complex protein SYD... 0.02 OrthoFinder
Cpa|evm.model.tig00000983.26 tig00000983_g5915.t1 RNA biosynthesis.RNA polymerase II-dependent... 0.02 OrthoFinder
Cpa|evm.model.tig00020960.24 tig00020960_g16545.t1 Protein CHROMATIN REMODELING 5 OS=Arabidopsis thaliana 0.02 OrthoFinder
Cpa|evm.model.tig00021275.25 tig00021275_g19885.t1 Probable chromatin-remodeling complex ATPase chain... 0.01 OrthoFinder
Cpa|evm.model.tig00021623.13 tig00021623_g23013.t1 RNA biosynthesis.transcriptional activation.PHD finger... 0.06 OrthoFinder
Cre07.g325700 30774388 ATP-dependent helicase BRM OS=Arabidopsis thaliana 0.03 OrthoFinder
Cre12.g508150 30793288 Chromatin organisation.chromatin remodeling... 0.05 OrthoFinder
Cz01g25030.t1 No alias Helicase, C-terminal; Chromo domain; Domain of unknown... 0.03 OrthoFinder
Cz02g31160.t1 No alias Helicase, C-terminal; SLIDE domain; SNF2-related,... 0.05 OrthoFinder
Cz05g24240.t1 No alias SNF2-related, N-terminal domain; Helicase, C-terminal... 0.02 OrthoFinder
Cz07g13180.t1 No alias Helicase, C-terminal; Domain of unknown function... 0.03 OrthoFinder
Cz19g07040.t1 No alias Helicase, C-terminal; SNF2-related, N-terminal domain;... 0.03 OrthoFinder
Dusal.0047s00031.1 33194295 Helicase, C-terminal; SLIDE domain; ISWI, HAND domain;... 0.05 OrthoFinder
Dusal.0280s00012.1 33203409 SNF2-related, N-terminal domain [Interproscan]. 0.02 OrthoFinder
Dusal.0357s00004.1 33189829 SNF2-related, N-terminal domain; Helicase, C-terminal;... 0.06 OrthoFinder
Dusal.0752s00002.1 33199466 Domain of unknown function DUF3535; SNF2-related,... 0.04 OrthoFinder
EOD05386 No alias Chromo domain; Helicase, C-terminal; SNF2-related,... 0.04 OrthoFinder
EOD17057 No alias Chromodomain helicase DNA binding protein [Ensembl]. 0.03 OrthoFinder
EOD18155 No alias High mobility group box domain; ISWI, HAND domain;... 0.04 OrthoFinder
EOD25651 No alias Helicase, C-terminal; SNF2-related, N-terminal domain... 0.03 OrthoFinder
EOD26260 No alias SNF2-related, N-terminal domain; ISWI, HAND domain;... 0.04 OrthoFinder
EOD28310 No alias Chromodomain helicase DNA binding protein [Ensembl]. 0.03 OrthoFinder
EOD31071 No alias Helicase, C-terminal; SNF2-related, N-terminal domain... 0.02 OrthoFinder
EOD33503 No alias Helicase, C-terminal; SNF2-related, N-terminal domain... 0.02 OrthoFinder
EOD36957 No alias Helicase, C-terminal; SNF2-related, N-terminal domain... 0.08 OrthoFinder
EOD41894 No alias SNF2-related, N-terminal domain [Interproscan]. 0.02 OrthoFinder
EOD41895 No alias Helicase, C-terminal [Interproscan]. 0.01 OrthoFinder
EOD41956 No alias Chromo domain; Helicase, C-terminal; SNF2-related,... 0.02 OrthoFinder
OT_05G01620.1 No alias Helicase, C-terminal; SNF2-related, N-terminal domain... 0.04 OrthoFinder
OT_06G03660.1 No alias Helicase, C-terminal; SNF2-related, N-terminal domain;... 0.02 OrthoFinder
OT_07G04020.1 No alias Helicase, C-terminal; SNF2-related, N-terminal domain... 0.02 OrthoFinder
OT_07G04400.1 No alias Helicase, C-terminal; ISWI, HAND domain; SNF2-related,... 0.04 OrthoFinder
OT_12G02840.1 No alias Helicase, C-terminal; SNF2-related, N-terminal domain;... 0.04 OrthoFinder
PTI_02G06230.1 No alias Bromodomain; Helicase, C-terminal; Snf2, ATP coupling... 0.03 OrthoFinder
PTI_04G04910.1 No alias Helicase, C-terminal; SNF2-related, N-terminal domain... 0.02 OrthoFinder
PTI_05G01880.1 No alias High mobility group box domain; Helicase, C-terminal;... 0.02 OrthoFinder
PTI_12G03630.1 No alias SLIDE domain; Helicase, C-terminal; SNF2-related,... 0.02 OrthoFinder
Sro125_g060200.1 Contig2833.g22731 Chromodomain-helicase-DNA-binding protein 0.02 OrthoFinder
Sro1796_g298120.1 Contig441.g5925 Probable chromatin-remodeling complex ATPase chain 0.03 OrthoFinder
Sro272_g104840.1 Contig2144.g18025 Chromodomain-helicase-DNA-binding protein 0.01 OrthoFinder
Transcript_contig_54441 54441 Helicase, C-terminal; SNF2-related, N-terminal domain... 0.03 OrthoFinder
Transcript_contig_67487 67487 Helicase, C-terminal; SNF2-related, N-terminal domain... 0.02 OrthoFinder
Transcript_contig_67500 67500 Helicase, C-terminal; SNF2-related, N-terminal domain... 0.01 OrthoFinder
Vocar.0015s0331.1 32898932 Chromo domain; Helicase, C-terminal; SNF2-related,... 0.02 OrthoFinder
Vocar.0016s0256.1 32897896 SLIDE domain; ISWI, HAND domain; Helicase, C-terminal;... 0.04 OrthoFinder
Vocar.0021s0108.1 32895927 SNF2-related, N-terminal domain [Interproscan]. 0.03 OrthoFinder
XM_002502289.1 MICPUN_58978, 58978 SNF2 super family 0.02 OrthoFinder
XM_002503125.1 MICPUN_91017, 91017 SNF2 super family 0.03 OrthoFinder
XM_002504726.1 MICPUN_62221, 62221 SNF2 super family 0.04 OrthoFinder
XM_002506691.1 MICPUN_64845, 64845 SNF2 super family 0.02 OrthoFinder
XM_003058971.1 MicpuC2_58412, 58412 SNF2 super family 0.02 OrthoFinder
XM_003061140.1 MicpuC2_28265, 28265 SNF2 super family 0.03 OrthoFinder
XM_003061952.1 MicpuC2_51787, 51787 SNF2 super family 0.04 OrthoFinder
XM_003064054.1 MicpuC2_54122, 54122 SNF2 super family 0.02 OrthoFinder
lcl|BLLF01000001.1_cds_GFH05550.1_27 HaLaN_00030, GFH05550 SNF2-related, N-terminal domain [Interproscan]. 0.01 OrthoFinder
lcl|BLLF01000629.1_cds_GFH13581.1_8058 HaLaN_09499, GFH13581 SNF2-related, N-terminal domain [Interproscan]. 0.03 OrthoFinder
lcl|BLLF01000629.1_cds_GFH13582.1_8059 HaLaN_09500, GFH13582 Helicase, C-terminal [Interproscan]. 0.02 OrthoFinder
lcl|BLLF01001410.1_cds_GFH19126.1_13603 HaLaN_16027, GFH19126 Helicase, C-terminal; SNF2-related, N-terminal domain... 0.02 OrthoFinder

Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEA Interproscan
MF GO:0003677 DNA binding IEA Interproscan
MF GO:0005524 ATP binding IEA Interproscan
MF GO:0005525 GTP binding IEA Interproscan
CC GO:0005634 nucleus IEA Interproscan
BP GO:0006338 chromatin remodeling IEA Interproscan
MF GO:0016818 hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides IEA Interproscan
MF GO:0031491 nucleosome binding IEA Interproscan
BP GO:0043044 ATP-dependent chromatin remodeling IEA Interproscan
Toggle parental
Type GO Term Name Evidence Source
BP GO:0000350 generation of catalytic spliceosome for second transesterification step IEP Enrichment
MF GO:0003899 DNA-directed 5'-3' RNA polymerase activity IEP Enrichment
MF GO:0004014 adenosylmethionine decarboxylase activity IEP Enrichment
MF GO:0004096 catalase activity IEP Enrichment
MF GO:0004386 helicase activity IEP Enrichment
MF GO:0004512 inositol-3-phosphate synthase activity IEP Enrichment
MF GO:0004672 protein kinase activity IEP Enrichment
MF GO:0004812 aminoacyl-tRNA ligase activity IEP Enrichment
MF GO:0004813 alanine-tRNA ligase activity IEP Enrichment
MF GO:0004819 glutamine-tRNA ligase activity IEP Enrichment
MF GO:0005049 nuclear export signal receptor activity IEP Enrichment
BP GO:0005991 trehalose metabolic process IEP Enrichment
BP GO:0005992 trehalose biosynthetic process IEP Enrichment
BP GO:0006020 inositol metabolic process IEP Enrichment
BP GO:0006021 inositol biosynthetic process IEP Enrichment
BP GO:0006082 organic acid metabolic process IEP Enrichment
BP GO:0006139 nucleobase-containing compound metabolic process IEP Enrichment
BP GO:0006351 transcription, DNA-templated IEP Enrichment
BP GO:0006366 transcription by RNA polymerase II IEP Enrichment
BP GO:0006399 tRNA metabolic process IEP Enrichment
BP GO:0006418 tRNA aminoacylation for protein translation IEP Enrichment
BP GO:0006419 alanyl-tRNA aminoacylation IEP Enrichment
BP GO:0006425 glutaminyl-tRNA aminoacylation IEP Enrichment
BP GO:0006464 cellular protein modification process IEP Enrichment
BP GO:0006468 protein phosphorylation IEP Enrichment
BP GO:0006520 cellular amino acid metabolic process IEP Enrichment
BP GO:0006576 cellular biogenic amine metabolic process IEP Enrichment
BP GO:0006595 polyamine metabolic process IEP Enrichment
BP GO:0006596 polyamine biosynthetic process IEP Enrichment
BP GO:0006597 spermine biosynthetic process IEP Enrichment
BP GO:0006725 cellular aromatic compound metabolic process IEP Enrichment
BP GO:0006807 nitrogen compound metabolic process IEP Enrichment
MF GO:0008094 ATPase, acting on DNA IEP Enrichment
BP GO:0008152 metabolic process IEP Enrichment
BP GO:0008215 spermine metabolic process IEP Enrichment
BP GO:0008216 spermidine metabolic process IEP Enrichment
BP GO:0008295 spermidine biosynthetic process IEP Enrichment
BP GO:0009309 amine biosynthetic process IEP Enrichment
BP GO:0009312 oligosaccharide biosynthetic process IEP Enrichment
BP GO:0016051 carbohydrate biosynthetic process IEP Enrichment
BP GO:0016070 RNA metabolic process IEP Enrichment
BP GO:0016310 phosphorylation IEP Enrichment
MF GO:0016740 transferase activity IEP Enrichment
MF GO:0016772 transferase activity, transferring phosphorus-containing groups IEP Enrichment
MF GO:0016779 nucleotidyltransferase activity IEP Enrichment
MF GO:0016853 isomerase activity IEP Enrichment
MF GO:0016872 intramolecular lyase activity IEP Enrichment
MF GO:0016874 ligase activity IEP Enrichment
MF GO:0016875 ligase activity, forming carbon-oxygen bonds IEP Enrichment
MF GO:0016884 carbon-nitrogen ligase activity, with glutamine as amido-N-donor IEP Enrichment
MF GO:0016887 ATPase IEP Enrichment
BP GO:0018130 heterocycle biosynthetic process IEP Enrichment
BP GO:0019438 aromatic compound biosynthetic process IEP Enrichment
BP GO:0019752 carboxylic acid metabolic process IEP Enrichment
MF GO:0019899 enzyme binding IEP Enrichment
BP GO:0022618 ribonucleoprotein complex assembly IEP Enrichment
MF GO:0031625 ubiquitin protein ligase binding IEP Enrichment
BP GO:0032774 RNA biosynthetic process IEP Enrichment
MF GO:0034062 5'-3' RNA polymerase activity IEP Enrichment
BP GO:0034637 cellular carbohydrate biosynthetic process IEP Enrichment
BP GO:0034641 cellular nitrogen compound metabolic process IEP Enrichment
BP GO:0034654 nucleobase-containing compound biosynthetic process IEP Enrichment
BP GO:0034660 ncRNA metabolic process IEP Enrichment
BP GO:0036211 protein modification process IEP Enrichment
BP GO:0042401 cellular biogenic amine biosynthetic process IEP Enrichment
BP GO:0043038 amino acid activation IEP Enrichment
BP GO:0043039 tRNA aminoacylation IEP Enrichment
BP GO:0043170 macromolecule metabolic process IEP Enrichment
BP GO:0043436 oxoacid metabolic process IEP Enrichment
BP GO:0044106 cellular amine metabolic process IEP Enrichment
BP GO:0044237 cellular metabolic process IEP Enrichment
BP GO:0044238 primary metabolic process IEP Enrichment
BP GO:0044260 cellular macromolecule metabolic process IEP Enrichment
BP GO:0044262 cellular carbohydrate metabolic process IEP Enrichment
BP GO:0044281 small molecule metabolic process IEP Enrichment
MF GO:0044389 ubiquitin-like protein ligase binding IEP Enrichment
BP GO:0046165 alcohol biosynthetic process IEP Enrichment
BP GO:0046173 polyol biosynthetic process IEP Enrichment
BP GO:0046351 disaccharide biosynthetic process IEP Enrichment
BP GO:0046483 heterocycle metabolic process IEP Enrichment
BP GO:0071704 organic substance metabolic process IEP Enrichment
BP GO:0071826 ribonucleoprotein complex subunit organization IEP Enrichment
BP GO:0090304 nucleic acid metabolic process IEP Enrichment
BP GO:0097659 nucleic acid-templated transcription IEP Enrichment
MF GO:0097747 RNA polymerase activity IEP Enrichment
MF GO:0140097 catalytic activity, acting on DNA IEP Enrichment
MF GO:0140098 catalytic activity, acting on RNA IEP Enrichment
MF GO:0140101 catalytic activity, acting on a tRNA IEP Enrichment
MF GO:0140104 molecular carrier activity IEP Enrichment
MF GO:0140142 nucleocytoplasmic carrier activity IEP Enrichment
MF GO:0140597 protein carrier activity IEP Enrichment
BP GO:1901360 organic cyclic compound metabolic process IEP Enrichment
BP GO:1901362 organic cyclic compound biosynthetic process IEP Enrichment
BP GO:1901564 organonitrogen compound metabolic process IEP Enrichment
BP GO:1901617 organic hydroxy compound biosynthetic process IEP Enrichment
InterPro domains Description Start Stop
IPR000330 SNF2_N 188 456
IPR015194 ISWI_HAND-dom 751 852
IPR020838 DBINO 66 118
IPR015195 SLIDE 909 1019
IPR022812 Dynamin 1073 1253
IPR000375 Dynamin_stalk 1270 1547
IPR001650 Helicase_C 479 591
No external refs found!