lcl|LHPG02000008.1_cds_PRW56597.1_9573 (PRW56597)

Aliases : PRW56597

Description : 40S ribosomal S17 isoform A

Gene families : OG_01_0002798 (OrthoFinder) Phylogenetic Tree(s): OG0002798_tree

Sequence : coding (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: lcl\|LHPG02000008.1_cds_PRW56597.1_9573
Cluster	HCCA: Cluster_23

Target	Alias	Description	ECC score	Gene Family Method
Cre12.g498250	30793608, RPS17	Protein biosynthesis.cytosolic ribosome.small subunit...	0.26	OrthoFinder
Cz02g24100.t1	No alias	Ribosomal protein S17e [Interproscan].	0.14	OrthoFinder
Dusal.0462s00007.1	33197488	Ribosomal protein S17e [Interproscan].	0.06	OrthoFinder
EOD21818	No alias	Ribosomal protein S17e [Interproscan].	0.05	OrthoFinder
OT_04G05050.1	No alias	Ribosomal protein S17e [Interproscan].	0.18	OrthoFinder
PTI_05G01130.1	No alias	Ribosomal protein S17e [Interproscan].	0.15	OrthoFinder
Sro13_g009690.1	Contig337.g4510	40S ribosomal protein S17	0.26	OrthoFinder
SymbC1.scaffold3580.6	3580.6	Ribosomal protein S17e [Interproscan].	0.01	OrthoFinder
SymbC1.scaffold3580.7	3580.7	Ribosomal protein S17e [Interproscan].	0.05	OrthoFinder
TP16G00420.1	No alias	Ribosomal protein S17e [Interproscan].	0.22	OrthoFinder
Transcript_contig_80128	80128	Ribosomal protein S17e [Interproscan].	0.02	OrthoFinder
Vocar.0006s0265.1	32893973	Ribosomal protein S17e [Interproscan].	0.15	OrthoFinder
XM_002504075.1	MICPUN_76945, 76945	Ribosomal protein S17e [Interproscan].	0.21	OrthoFinder
XM_003059599.1	MicpuC2_34073, 34073	Ribosomal protein S17e [Interproscan].	0.1	OrthoFinder
lcl\|BLLF01003084.1_cds_GFH26294.1_20771	HaLaN_24421, GFH26294	Ribosomal protein S17e [Interproscan].	0.04	OrthoFinder
lcl\|VRMN01000015.1_cds_KAA8491192.1_5820	KAA8491192	40S ribosomal protein S17	0.1	OrthoFinder

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003735	structural constituent of ribosome	IEA	Interproscan
MF	GO:0005198	structural molecule activity	None	Extended
CC	GO:0005575	cellular_component	None	Extended
CC	GO:0005840	ribosome	IEA	Interproscan
BP	GO:0006412	translation	IEA	Interproscan
BP	GO:0006518	peptide metabolic process	None	Extended
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
BP	GO:0009058	biosynthetic process	None	Extended
BP	GO:0009059	macromolecule biosynthetic process	None	Extended
BP	GO:0009987	cellular process	None	Extended
BP	GO:0019538	protein metabolic process	None	Extended
BP	GO:0034641	cellular nitrogen compound metabolic process	None	Extended
BP	GO:0034645	cellular macromolecule biosynthetic process	None	Extended
BP	GO:0043043	peptide biosynthetic process	None	Extended
BP	GO:0043170	macromolecule metabolic process	None	Extended
CC	GO:0043226	organelle	None	Extended
CC	GO:0043228	non-membrane-bounded organelle	None	Extended
CC	GO:0043229	intracellular organelle	None	Extended
CC	GO:0043232	intracellular non-membrane-bounded organelle	None	Extended
BP	GO:0043603	cellular amide metabolic process	None	Extended
BP	GO:0043604	amide biosynthetic process	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0044249	cellular biosynthetic process	None	Extended
BP	GO:0044260	cellular macromolecule metabolic process	None	Extended
BP	GO:0044267	cellular protein metabolic process	None	Extended
BP	GO:0044271	cellular nitrogen compound biosynthetic process	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
CC	GO:0110165	cellular anatomical entity	None	Extended
BP	GO:1901564	organonitrogen compound metabolic process	None	Extended
BP	GO:1901566	organonitrogen compound biosynthetic process	None	Extended
BP	GO:1901576	organic substance biosynthetic process	None	Extended

Toggle parental

Type	GO Term	Name	Evidence	Source
CC	GO:0000786	nucleosome	IEP	Enrichment
MF	GO:0003989	acetyl-CoA carboxylase activity	IEP	Enrichment
MF	GO:0004392	heme oxygenase (decyclizing) activity	IEP	Enrichment
MF	GO:0004619	phosphoglycerate mutase activity	IEP	Enrichment
MF	GO:0005047	signal recognition particle binding	IEP	Enrichment
MF	GO:0005215	transporter activity	IEP	Enrichment
MF	GO:0005315	inorganic phosphate transmembrane transporter activity	IEP	Enrichment
CC	GO:0005737	cytoplasm	IEP	Enrichment
CC	GO:0005785	signal recognition particle receptor complex	IEP	Enrichment
BP	GO:0005996	monosaccharide metabolic process	IEP	Enrichment
BP	GO:0006006	glucose metabolic process	IEP	Enrichment
BP	GO:0006007	glucose catabolic process	IEP	Enrichment
BP	GO:0006359	regulation of transcription by RNA polymerase III	IEP	Enrichment
BP	GO:0006658	phosphatidylserine metabolic process	IEP	Enrichment
BP	GO:0006659	phosphatidylserine biosynthetic process	IEP	Enrichment
BP	GO:0006788	heme oxidation	IEP	Enrichment
BP	GO:0006810	transport	IEP	Enrichment
BP	GO:0006811	ion transport	IEP	Enrichment
BP	GO:0006817	phosphate ion transport	IEP	Enrichment
BP	GO:0006820	anion transport	IEP	Enrichment
BP	GO:0006873	cellular ion homeostasis	IEP	Enrichment
BP	GO:0006875	cellular metal ion homeostasis	IEP	Enrichment
BP	GO:0006879	cellular iron ion homeostasis	IEP	Enrichment
MF	GO:0008199	ferric iron binding	IEP	Enrichment
BP	GO:0009056	catabolic process	IEP	Enrichment
CC	GO:0009317	acetyl-CoA carboxylase complex	IEP	Enrichment
BP	GO:0009890	negative regulation of biosynthetic process	IEP	Enrichment
BP	GO:0010558	negative regulation of macromolecule biosynthetic process	IEP	Enrichment
MF	GO:0015267	channel activity	IEP	Enrichment
MF	GO:0015291	secondary active transmembrane transporter activity	IEP	Enrichment
MF	GO:0015318	inorganic molecular entity transmembrane transporter activity	IEP	Enrichment
BP	GO:0015698	inorganic anion transport	IEP	Enrichment
CC	GO:0015934	large ribosomal subunit	IEP	Enrichment
CC	GO:0016020	membrane	IEP	Enrichment
BP	GO:0016052	carbohydrate catabolic process	IEP	Enrichment
MF	GO:0016421	CoA carboxylase activity	IEP	Enrichment
BP	GO:0016480	negative regulation of transcription by RNA polymerase III	IEP	Enrichment
MF	GO:0016866	intramolecular transferase activity	IEP	Enrichment
MF	GO:0016868	intramolecular transferase activity, phosphotransferases	IEP	Enrichment
MF	GO:0016885	ligase activity, forming carbon-carbon bonds	IEP	Enrichment
BP	GO:0019318	hexose metabolic process	IEP	Enrichment
BP	GO:0019320	hexose catabolic process	IEP	Enrichment
MF	GO:0022803	passive transmembrane transporter activity	IEP	Enrichment
MF	GO:0022804	active transmembrane transporter activity	IEP	Enrichment
MF	GO:0022857	transmembrane transporter activity	IEP	Enrichment
BP	GO:0030003	cellular cation homeostasis	IEP	Enrichment
MF	GO:0030145	manganese ion binding	IEP	Enrichment
CC	GO:0030286	dynein complex	IEP	Enrichment
BP	GO:0031324	negative regulation of cellular metabolic process	IEP	Enrichment
BP	GO:0031327	negative regulation of cellular biosynthetic process	IEP	Enrichment
CC	GO:0032991	protein-containing complex	IEP	Enrichment
CC	GO:0032993	protein-DNA complex	IEP	Enrichment
BP	GO:0042168	heme metabolic process	IEP	Enrichment
MF	GO:0043021	ribonucleoprotein complex binding	IEP	Enrichment
BP	GO:0044282	small molecule catabolic process	IEP	Enrichment
CC	GO:0044391	ribosomal subunit	IEP	Enrichment
CC	GO:0044815	DNA packaging complex	IEP	Enrichment
MF	GO:0045735	nutrient reservoir activity	IEP	Enrichment
BP	GO:0045892	negative regulation of transcription, DNA-templated	IEP	Enrichment
BP	GO:0045934	negative regulation of nucleobase-containing compound metabolic process	IEP	Enrichment
BP	GO:0046365	monosaccharide catabolic process	IEP	Enrichment
MF	GO:0046914	transition metal ion binding	IEP	Enrichment
BP	GO:0046916	cellular transition metal ion homeostasis	IEP	Enrichment
BP	GO:0048878	chemical homeostasis	IEP	Enrichment
BP	GO:0050801	ion homeostasis	IEP	Enrichment
BP	GO:0051172	negative regulation of nitrogen compound metabolic process	IEP	Enrichment
BP	GO:0051179	localization	IEP	Enrichment
BP	GO:0051234	establishment of localization	IEP	Enrichment
BP	GO:0051253	negative regulation of RNA metabolic process	IEP	Enrichment
BP	GO:0055065	metal ion homeostasis	IEP	Enrichment
BP	GO:0055072	iron ion homeostasis	IEP	Enrichment
BP	GO:0055076	transition metal ion homeostasis	IEP	Enrichment
BP	GO:0055080	cation homeostasis	IEP	Enrichment
BP	GO:0055082	cellular chemical homeostasis	IEP	Enrichment
BP	GO:0098771	inorganic ion homeostasis	IEP	Enrichment
BP	GO:1901575	organic substance catabolic process	IEP	Enrichment
BP	GO:1902679	negative regulation of RNA biosynthetic process	IEP	Enrichment
BP	GO:1903507	negative regulation of nucleic acid-templated transcription	IEP	Enrichment
BP	GO:2000113	negative regulation of cellular macromolecule biosynthetic process	IEP	Enrichment

InterPro domains	Description	Start	Stop
IPR001210	Ribosomal_S17e	1	121

External Links

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lcl|LHPG02000008.1_cds_PRW56597.1_9573 (PRW56597)

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation