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  5. lcl|LHPG02000007.1_cds_PRW57348.1_8998

lcl|LHPG02000007.1_cds_PRW57348.1_8998 (PRW57348)


Aliases : PRW57348

Description : RNA-binding 28 isoform B


Gene families : OG_01_0003296 (OrthoFinder) Phylogenetic Tree(s): OG0003296_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: lcl|LHPG02000007.1_cds_PRW57348.1_8998
Cluster HCCA: Cluster_11

Target Alias Description ECC score Gene Family Method Actions
Cpa|evm.model.tig00000144.75 tig00000144_g9066.t1 No description available 0.11 OrthoFinder
Cre02.g104650 30785421 No description available 0.2 OrthoFinder
Cz10g04070.t1 No alias RNA recognition motif domain [Interproscan]. 0.05 OrthoFinder
OT_10G02900.1 No alias RNA recognition motif domain [Interproscan]. 0.1 OrthoFinder
PTI_23G00340.1 No alias RNA recognition motif domain [Interproscan]. 0.21 OrthoFinder
Sro251_g099260.1 Contig687.g8006 RNA-binding protein 28 0.13 OrthoFinder
Transcript_contig_57849 57849 RNA recognition motif domain [Interproscan]. 0.1 OrthoFinder
Transcript_contig_58008 58008 RNA recognition motif domain [Interproscan]. 0.06 OrthoFinder
Vocar.0020s0164.1 32886730 RNA recognition motif domain [Interproscan]. 0.07 OrthoFinder
XM_002503386.1 MICPUN_101277, 101277 RNA recognition motif domain [Interproscan]. 0.22 OrthoFinder
XM_003055646.1 MicpuC2_1653, 1653 RNA recognition motif domain [Interproscan]. 0.1 OrthoFinder
lcl|BLLF01000077.1_cds_GFH07148.1_1625 HaLaN_01909, GFH07148 Hypothetical protein 0.09 OrthoFinder
lcl|BLLF01000077.1_cds_GFH07149.1_1626 HaLaN_01910, GFH07149 RNA recognition motif domain [Interproscan]. 0.11 OrthoFinder
lcl|VRMN01000007.1_cds_KAA8493286.1_9587 KAA8493286 RNA-binding protein 28 0.09 OrthoFinder

Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0000166 nucleotide binding IEP Enrichment
BP GO:0000462 maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) IEP Enrichment
MF GO:0003723 RNA binding IEP Enrichment
MF GO:0003724 RNA helicase activity IEP Enrichment
MF GO:0003950 NAD+ ADP-ribosyltransferase activity IEP Enrichment
MF GO:0004359 glutaminase activity IEP Enrichment
MF GO:0004386 helicase activity IEP Enrichment
MF GO:0004809 tRNA (guanine-N2-)-methyltransferase activity IEP Enrichment
MF GO:0005319 lipid transporter activity IEP Enrichment
CC GO:0005634 nucleus IEP Enrichment
CC GO:0005730 nucleolus IEP Enrichment
CC GO:0005732 sno(s)RNA-containing ribonucleoprotein complex IEP Enrichment
BP GO:0006081 cellular aldehyde metabolic process IEP Enrichment
BP GO:0006139 nucleobase-containing compound metabolic process IEP Enrichment
BP GO:0006351 transcription, DNA-templated IEP Enrichment
BP GO:0006364 rRNA processing IEP Enrichment
BP GO:0006396 RNA processing IEP Enrichment
BP GO:0006725 cellular aromatic compound metabolic process IEP Enrichment
BP GO:0006869 lipid transport IEP Enrichment
BP GO:0008033 tRNA processing IEP Enrichment
MF GO:0008094 ATPase, acting on DNA IEP Enrichment
MF GO:0008134 transcription factor binding IEP Enrichment
MF GO:0008170 N-methyltransferase activity IEP Enrichment
BP GO:0008272 sulfate transport IEP Enrichment
MF GO:0008509 anion transmembrane transporter activity IEP Enrichment
BP GO:0009987 cellular process IEP Enrichment
MF GO:0015103 inorganic anion transmembrane transporter activity IEP Enrichment
MF GO:0015116 sulfate transmembrane transporter activity IEP Enrichment
BP GO:0015698 inorganic anion transport IEP Enrichment
BP GO:0016070 RNA metabolic process IEP Enrichment
BP GO:0016072 rRNA metabolic process IEP Enrichment
MF GO:0017025 TBP-class protein binding IEP Enrichment
MF GO:0017076 purine nucleotide binding IEP Enrichment
MF GO:0017150 tRNA dihydrouridine synthase activity IEP Enrichment
BP GO:0018130 heterocycle biosynthetic process IEP Enrichment
BP GO:0019438 aromatic compound biosynthetic process IEP Enrichment
BP GO:0022613 ribonucleoprotein complex biogenesis IEP Enrichment
BP GO:0030490 maturation of SSU-rRNA IEP Enrichment
MF GO:0030515 snoRNA binding IEP Enrichment
CC GO:0030684 preribosome IEP Enrichment
CC GO:0030688 preribosome, small subunit precursor IEP Enrichment
CC GO:0032040 small-subunit processome IEP Enrichment
MF GO:0032553 ribonucleotide binding IEP Enrichment
MF GO:0032555 purine ribonucleotide binding IEP Enrichment
BP GO:0032774 RNA biosynthetic process IEP Enrichment
CC GO:0034457 Mpp10 complex IEP Enrichment
BP GO:0034470 ncRNA processing IEP Enrichment
BP GO:0034641 cellular nitrogen compound metabolic process IEP Enrichment
BP GO:0034645 cellular macromolecule biosynthetic process IEP Enrichment
BP GO:0034654 nucleobase-containing compound biosynthetic process IEP Enrichment
BP GO:0034660 ncRNA metabolic process IEP Enrichment
MF GO:0035639 purine ribonucleoside triphosphate binding IEP Enrichment
BP GO:0042254 ribosome biogenesis IEP Enrichment
BP GO:0042274 ribosomal small subunit biogenesis IEP Enrichment
BP GO:0042816 vitamin B6 metabolic process IEP Enrichment
BP GO:0042819 vitamin B6 biosynthetic process IEP Enrichment
BP GO:0042822 pyridoxal phosphate metabolic process IEP Enrichment
BP GO:0042823 pyridoxal phosphate biosynthetic process IEP Enrichment
MF GO:0043167 ion binding IEP Enrichment
MF GO:0043168 anion binding IEP Enrichment
BP GO:0043170 macromolecule metabolic process IEP Enrichment
CC GO:0043226 organelle IEP Enrichment
CC GO:0043227 membrane-bounded organelle IEP Enrichment
CC GO:0043229 intracellular organelle IEP Enrichment
CC GO:0043231 intracellular membrane-bounded organelle IEP Enrichment
BP GO:0044085 cellular component biogenesis IEP Enrichment
BP GO:0044237 cellular metabolic process IEP Enrichment
BP GO:0046184 aldehyde biosynthetic process IEP Enrichment
BP GO:0046483 heterocycle metabolic process IEP Enrichment
BP GO:0061024 membrane organization IEP Enrichment
BP GO:0071840 cellular component organization or biogenesis IEP Enrichment
BP GO:0072348 sulfur compound transport IEP Enrichment
BP GO:0090304 nucleic acid metabolic process IEP Enrichment
MF GO:0097367 carbohydrate derivative binding IEP Enrichment
BP GO:0097659 nucleic acid-templated transcription IEP Enrichment
BP GO:0120009 intermembrane lipid transfer IEP Enrichment
MF GO:0120013 lipid transfer activity IEP Enrichment
MF GO:0140097 catalytic activity, acting on DNA IEP Enrichment
MF GO:0140098 catalytic activity, acting on RNA IEP Enrichment
MF GO:0140296 general transcription initiation factor binding IEP Enrichment
MF GO:1901265 nucleoside phosphate binding IEP Enrichment
BP GO:1901360 organic cyclic compound metabolic process IEP Enrichment
BP GO:1901362 organic cyclic compound biosynthetic process IEP Enrichment
MF GO:1901682 sulfur compound transmembrane transporter activity IEP Enrichment
CC GO:1990904 ribonucleoprotein complex IEP Enrichment
InterPro domains Description Start Stop
IPR000504 RRM_dom 15 85
IPR000504 RRM_dom 684 759
IPR000504 RRM_dom 527 587
IPR000504 RRM_dom 271 339
No external refs found!