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  5. lcl|LHPG02000007.1_cds_PRW57339.1_9052

lcl|LHPG02000007.1_cds_PRW57339.1_9052 (PRW57339)


Aliases : PRW57339

Description : Histone H2A


Gene families : OG_01_0000046 (OrthoFinder) Phylogenetic Tree(s): OG0000046_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: lcl|LHPG02000007.1_cds_PRW57339.1_9052
Cluster HCCA: Cluster_43

Target Alias Description ECC score Gene Family Method Actions
Cpa|evm.model.tig00021108.27 tig00021108_g18317.t1 Chromatin organisation.histones.H2A-type histone 0.01 OrthoFinder
Cre06.g264750 30778682, HTA14 Chromatin organisation.histones.H2A-type histone 0.04 OrthoFinder
Cre06.g264950 30779952 Chromatin organisation.histones.H2A-type histone 0.04 OrthoFinder
Cre06.g265350 30779523 Chromatin organisation.histones.H2A-type histone 0.03 OrthoFinder
Cre06.g266700 30779158 Chromatin organisation.histones.H2A-type histone 0.05 OrthoFinder
Cre06.g268050 30779224, HTA10 Chromatin organisation.histones.H2A-type histone 0.05 OrthoFinder
Cre06.g268300 30778781, HTA9 Chromatin organisation.histones.H2A-type histone 0.05 OrthoFinder
Cre06.g271350 30779391 Chromatin organisation.histones.H2A-type histone 0.05 OrthoFinder
Cre06.g273900 30779778 Chromatin organisation.histones.H2A-type histone 0.05 OrthoFinder
Cre06.g274200 30778751 Chromatin organisation.histones.H2A-type histone 0.05 OrthoFinder
Cre06.g274800 30780111, HTA26 Chromatin organisation.histones.H2A-type histone 0.05 OrthoFinder
Cre06.g275850 30779335 Chromatin organisation.histones.H2A-type histone 0.05 OrthoFinder
Cre06.g276500 30778822, HTA23 Chromatin organisation.histones.H2A-type histone 0.05 OrthoFinder
Cre06.g276950 30778754, HTA24 Chromatin organisation.histones.H2A-type histone 0.05 OrthoFinder
Cre12.g504500 30793209 Chromatin organisation.histones.H2A-type histone 0.04 OrthoFinder
Cre12.g504750 30792225 Chromatin organisation.histones.H2A-type histone 0.05 OrthoFinder
Cre12.g505550 30793129 Chromatin organisation.histones.H2A-type histone 0.05 OrthoFinder
Cre12.g506250 30793152, HTA18 Chromatin organisation.histones.H2A-type histone 0.05 OrthoFinder
Cre13.g570100 30784159, HTA2 Chromatin organisation.histones.H2A-type histone 0.04 OrthoFinder
Cre13.g590800 30783997, HTA37 Chromatin organisation.histones.H2A-type histone 0.02 OrthoFinder
Cre13.g591150 30784726, HTA38 Chromatin organisation.histones.H2A-type histone 0.02 OrthoFinder
Cre17.g708550 30781878, HTA20 Chromatin organisation.histones.H2A-type histone 0.05 OrthoFinder
Cre17.g709200 30782358 Chromatin organisation.histones.H2A-type histone 0.05 OrthoFinder
Cre17.g710400 30782701, HTA19 Chromatin organisation.histones.H2A-type histone 0.04 OrthoFinder
Cre17.g711700 30781638, HTA5 Chromatin organisation.histones.H2A-type histone 0.05 OrthoFinder
Cre17.g713400 30781819 Chromatin organisation.histones.H2A-type histone 0.05 OrthoFinder
Cre17.g714500 30782017, HTA1 Chromatin organisation.histones.H2A-type histone 0.04 OrthoFinder
Cz02g02050.t1 No alias Histone H2A/H2B/H3; Histone H2A, C-terminal domain... 0.04 OrthoFinder
Cz05g04180.t1 No alias Histone H2A/H2B/H3; Histone H2A, C-terminal domain... 0.04 OrthoFinder
Cz07g08180.t1 No alias Histone H2A/H2B/H3; Histone H2A, C-terminal domain... 0.04 OrthoFinder
Cz08g27130.t1 No alias Histone H2A/H2B/H3; Histone H2A, C-terminal domain... 0.04 OrthoFinder
Cz18g11100.t1 No alias Histone H2A/H2B/H3; Histone H2A, C-terminal domain... 0.04 OrthoFinder
Dusal.0002s00036.1 33187941 Histone H2A/H2B/H3; Histone H2A, C-terminal domain... 0.02 OrthoFinder
Dusal.0152s00023.1 33186201 Histone H2A/H2B/H3; Histone H2A, C-terminal domain... 0.03 OrthoFinder
Dusal.0165s00017.1 33193347 Histone H2A/H2B/H3; Histone H2A, C-terminal domain... 0.02 OrthoFinder
Dusal.0322s00015.1 33197808 Histone H2A/H2B/H3; Histone H2A, C-terminal domain... 0.03 OrthoFinder
Dusal.0688s00003.1 33202688 Histone H2A/H2B/H3; Histone H2A, C-terminal domain... 0.02 OrthoFinder
EOD22956 No alias Putative histone H2A [Ensembl]. 0.02 OrthoFinder
EOD22963 No alias Putative histone H2A [Ensembl]. 0.02 OrthoFinder
OT_08G01910.1 No alias Histone H2A/H2B/H3; Histone H2A, C-terminal domain... 0.03 OrthoFinder
OT_12G00910.1 No alias Histone H2A/H2B/H3; Histone H2A, C-terminal domain... 0.02 OrthoFinder
OT_16G01100.1 No alias Histone H2A/H2B/H3; Histone H2A, C-terminal domain... 0.03 OrthoFinder
PTI_06G01940.1 No alias Histone H2A, C-terminal domain; Histone H2A/H2B/H3... 0.02 OrthoFinder
PTI_06G02110.1 No alias Histone H2A, C-terminal domain; Histone H2A/H2B/H3... 0.02 OrthoFinder
Sro120_g058300.1 Contig2411.g19708 H2A.z 0.01 OrthoFinder
Sro392_g133380.1 Contig4514.g33844 Histone H2A 0.02 OrthoFinder
Sro470_g149450.1 Contig850.g9339 Histone H2A 0.02 OrthoFinder
TP07G03180.1 No alias Histone H2A, C-terminal domain; Histone H2A/H2B/H3... 0.02 OrthoFinder
Vocar.0002s0391.1 32890987 Histone H2A/H2B/H3; Histone H2A, C-terminal domain... 0.04 OrthoFinder
Vocar.0016s0282.1 32897978 Histone H2A/H2B/H3; Histone H2A, C-terminal domain... 0.02 OrthoFinder
Vocar.0027s0138.1 32887219 Histone H2A/H2B/H3; Histone H2A, C-terminal domain... 0.02 OrthoFinder
XM_002501356.1 MICPUN_81242, 81242 Histone H2A 0.02 OrthoFinder
XM_003054928.1 MicpuC2_12375, 12375 Histone H2A 0.03 OrthoFinder
XM_003058838.1 MicpuC2_17393, 17393 Histone H2A, C-terminal domain; Histone H2A/H2B/H3... 0.03 OrthoFinder
XM_003063174.1 MicpuC2_11887, 11887 Histone H2A, C-terminal domain; Histone H2A/H2B/H3... 0.03 OrthoFinder
lcl|LHPG02000007.1_cds_PRW57021.1_9025 PRW57021 Histone H2A 0.03 OrthoFinder
lcl|LHPG02000007.1_cds_PRW57065.1_9163 PRW57065 Histone H2A 0.03 OrthoFinder
lcl|LHPG02000018.1_cds_PRW32926.1_3778 PRW32926 Histone H2A 0.04 OrthoFinder
lcl|VRMN01000010.1_cds_KAA8492219.1_5402 KAA8492219 Histone H2A.V 0.04 OrthoFinder

Type GO Term Name Evidence Source
CC GO:0000786 nucleosome IEA Interproscan
MF GO:0003677 DNA binding IEA Interproscan
Toggle parental
Type GO Term Name Evidence Source
MF GO:0000049 tRNA binding IEP Enrichment
MF GO:0003918 DNA topoisomerase type II (double strand cut, ATP-hydrolyzing) activity IEP Enrichment
MF GO:0004812 aminoacyl-tRNA ligase activity IEP Enrichment
BP GO:0006418 tRNA aminoacylation for protein translation IEP Enrichment
BP GO:0006520 cellular amino acid metabolic process IEP Enrichment
MF GO:0008131 primary amine oxidase activity IEP Enrichment
MF GO:0016638 oxidoreductase activity, acting on the CH-NH2 group of donors IEP Enrichment
MF GO:0016641 oxidoreductase activity, acting on the CH-NH2 group of donors, oxygen as acceptor IEP Enrichment
MF GO:0016791 phosphatase activity IEP Enrichment
MF GO:0016875 ligase activity, forming carbon-oxygen bonds IEP Enrichment
MF GO:0019211 phosphatase activator activity IEP Enrichment
MF GO:0030246 carbohydrate binding IEP Enrichment
MF GO:0030247 polysaccharide binding IEP Enrichment
MF GO:0042578 phosphoric ester hydrolase activity IEP Enrichment
BP GO:0043038 amino acid activation IEP Enrichment
BP GO:0043039 tRNA aminoacylation IEP Enrichment
MF GO:0048038 quinone binding IEP Enrichment
MF GO:2001070 starch binding IEP Enrichment
InterPro domains Description Start Stop
IPR007125 Histone_H2A/H2B/H3 10 88
IPR032454 Histone_H2A_C 91 124
No external refs found!