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  5. lcl|LHPG02000007.1_cds_PRW57107.1_9026

lcl|LHPG02000007.1_cds_PRW57107.1_9026 (PRW57107)


Aliases : PRW57107

Description : Histone


Gene families : OG_01_0000102 (OrthoFinder) Phylogenetic Tree(s): OG0000102_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: lcl|LHPG02000007.1_cds_PRW57107.1_9026
Cluster HCCA: Cluster_66

Target Alias Description ECC score Gene Family Method Actions
Cre06.g264900 30779615, HTB13 Chromatin organisation.histones.H2B-type histone 0.03 OrthoFinder
Cre06.g271376 30780144 Chromatin organisation.histones.H2B-type histone 0.05 OrthoFinder
Cre06.g274250 30779155 Chromatin organisation.histones.H2B-type histone 0.03 OrthoFinder
Cre06.g276550 30778890, HTB23 Chromatin organisation.histones.H2B-type histone 0.03 OrthoFinder
Cre12.g504700 30793271 Chromatin organisation.histones.H2B-type histone 0.03 OrthoFinder
Cre12.g506200 30793175 Chromatin organisation.histones.H2B-type histone 0.04 OrthoFinder
Cre13.g570050 30784307, HTB2 Chromatin organisation.histones.H2B-type histone 0.03 OrthoFinder
Cre13.g590750 30783880, HTB37 Chromatin organisation.histones.H2B-type histone 0.05 OrthoFinder
Cre13.g591200 30784473, HTB38 Chromatin organisation.histones.H2B-type histone 0.05 OrthoFinder
Cre17.g709150 30782749 Chromatin organisation.histones.H2B-type histone 0.03 OrthoFinder
Cre17.g710450 30782433 Chromatin organisation.histones.H2B-type histone 0.03 OrthoFinder
Cre17.g711750 30781954 Chromatin organisation.histones.H2B-type histone 0.03 OrthoFinder
Cre17.g713450 30782606 Chromatin organisation.histones.H2B-type histone 0.04 OrthoFinder
Cre17.g714050 30782614, HTB21 Chromatin organisation.histones.H2B-type histone 0.03 OrthoFinder
Cz02g02060.t1 No alias Histone H2A/H2B/H3 [Interproscan]. 0.04 OrthoFinder
Cz05g04190.t1 No alias Histone H2A/H2B/H3 [Interproscan]. 0.03 OrthoFinder
Cz07g08190.t1 No alias Histone H2A/H2B/H3 [Interproscan]. 0.03 OrthoFinder
Cz08g27120.t1 No alias Histone H2A/H2B/H3 [Interproscan]. 0.02 OrthoFinder
Cz18g11110.t1 No alias Histone H2A/H2B/H3 [Interproscan]. 0.03 OrthoFinder
EOD16252 No alias Histone H2A/H2B/H3 [Interproscan]. 0.03 OrthoFinder
EOD17479 No alias Histone H2A/H2B/H3 [Interproscan]. 0.03 OrthoFinder
EOD18484 No alias Histone H2A/H2B/H3 [Interproscan]. 0.03 OrthoFinder
EOD26824 No alias Putative histone H2B [Ensembl]. 0.03 OrthoFinder
EOD41189 No alias Putative histone H2B [Ensembl]. 0.03 OrthoFinder
OT_08G01920.1 No alias Histone H2A/H2B/H3 [Interproscan]. 0.05 OrthoFinder
OT_12G00920.1 No alias Histone H2A/H2B/H3 [Interproscan]. 0.03 OrthoFinder
PTI_06G02120.1 No alias Histone H2A/H2B/H3 [Interproscan]. 0.04 OrthoFinder
PTI_06G04930.1 No alias Histone H2A/H2B/H3 [Interproscan]. 0.02 OrthoFinder
Sro1535_g280540.1 Contig3021.g24091 Histone H2B 0.02 OrthoFinder
TP05G07690.1 No alias Histone H2A/H2B/H3 [Interproscan]. 0.03 OrthoFinder
Vocar.0027s0139.1 32887089 Histone H2A/H2B/H3 [Interproscan]. 0.02 OrthoFinder
Vocar.0027s0148.1 32887083 Histone H2A/H2B/H3 [Interproscan]. 0.02 OrthoFinder
XM_003055466.1 MicpuC2_13212, 13212 Histone H2B 0.02 OrthoFinder
XM_003058473.1 MicpuC2_58125, 58125 Histone H2A/H2B/H3 [Interproscan]. 0.03 OrthoFinder
lcl|LHPG02000002.1_cds_PRW60378.1_4501 PRW60378 Histone H2B 0.03 OrthoFinder
lcl|LHPG02000007.1_cds_PRW56968.1_9099 PRW56968 Histone 0.02 OrthoFinder
lcl|LHPG02000007.1_cds_PRW57308.1_9005 PRW57308 Histone 0.02 OrthoFinder
lcl|LHPG02000007.1_cds_PRW57429.1_9063 PRW57429 Histone 0.02 OrthoFinder
lcl|LHPG02000018.1_cds_PRW33046.1_3813 PRW33046 Histone 0.02 OrthoFinder

Type GO Term Name Evidence Source
CC GO:0000786 nucleosome IEA Interproscan
MF GO:0003677 DNA binding IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0003723 RNA binding IEP Enrichment
MF GO:0003735 structural constituent of ribosome IEP Enrichment
MF GO:0003743 translation initiation factor activity IEP Enrichment
MF GO:0005198 structural molecule activity IEP Enrichment
CC GO:0005840 ribosome IEP Enrichment
CC GO:0005852 eukaryotic translation initiation factor 3 complex IEP Enrichment
BP GO:0006412 translation IEP Enrichment
BP GO:0006518 peptide metabolic process IEP Enrichment
BP GO:0007034 vacuolar transport IEP Enrichment
CC GO:0009654 photosystem II oxygen evolving complex IEP Enrichment
BP GO:0010109 regulation of photosynthesis IEP Enrichment
BP GO:0010207 photosystem II assembly IEP Enrichment
MF GO:0010242 oxygen evolving activity IEP Enrichment
MF GO:0019843 rRNA binding IEP Enrichment
BP GO:0042548 regulation of photosynthesis, light reaction IEP Enrichment
BP GO:0042549 photosystem II stabilization IEP Enrichment
BP GO:0043043 peptide biosynthetic process IEP Enrichment
CC GO:0043228 non-membrane-bounded organelle IEP Enrichment
CC GO:0043232 intracellular non-membrane-bounded organelle IEP Enrichment
BP GO:0043467 regulation of generation of precursor metabolites and energy IEP Enrichment
BP GO:0043603 cellular amide metabolic process IEP Enrichment
BP GO:0043604 amide biosynthetic process IEP Enrichment
CC GO:1990204 oxidoreductase complex IEP Enrichment
InterPro domains Description Start Stop
IPR007125 Histone_H2A/H2B/H3 14 99
No external refs found!