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Aliases : PRW56902
Description : Serine hydroxymethyltransferase 3
Gene families : OG_01_0000330 (OrthoFinder) Phylogenetic Tree(s): OG0000330_tree
Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.
| Type | Description | Actions |
|---|---|---|
| Neighborhood | HRR: lcl|LHPG02000007.1_cds_PRW56902.1_8801 | |
| Cluster | HCCA: Cluster_69 |
| Target | Alias | Description | ECC score | Gene Family Method | Actions |
|---|---|---|---|---|---|
| Cpa|evm.model.tig00001130.31 | tig00001130_g7262.t1 | Enzyme classification.EC_2 transferases.EC_2.1... | 0.01 | OrthoFinder | |
| Cre09.g411900 | 30781084, SHMT3 | Photosynthesis.photorespiration.serine hydroxymethyltransferase | 0.02 | OrthoFinder | |
| Transcript_contig_78586 | 78586 | Serine hydroxymethyltransferase-like domain [Interproscan]. | 0.01 | OrthoFinder | |
| Vocar.0013s0225.1 | 32896458 | Serine hydroxymethyltransferase-like domain [Interproscan]. | 0.02 | OrthoFinder | |
| XM_003062377.1 | MicpuC2_29249, 29249 | Serine hydroxymethyltransferase-like domain [Interproscan]. | 0.03 | OrthoFinder |
| Type | GO Term | Name | Evidence | Source |
|---|---|---|---|---|
No GO annotation available for this sequence |
| Type | GO Term | Name | Evidence | Source |
|---|---|---|---|---|
| MF | GO:0000166 | nucleotide binding | IEP | Enrichment |
| MF | GO:0003674 | molecular_function | IEP | Enrichment |
| MF | GO:0003824 | catalytic activity | IEP | Enrichment |
| MF | GO:0003849 | 3-deoxy-7-phosphoheptulonate synthase activity | IEP | Enrichment |
| MF | GO:0003937 | IMP cyclohydrolase activity | IEP | Enrichment |
| MF | GO:0003954 | NADH dehydrogenase activity | IEP | Enrichment |
| MF | GO:0003955 | NAD(P)H dehydrogenase (quinone) activity | IEP | Enrichment |
| MF | GO:0004190 | aspartic-type endopeptidase activity | IEP | Enrichment |
| MF | GO:0004340 | glucokinase activity | IEP | Enrichment |
| MF | GO:0004396 | hexokinase activity | IEP | Enrichment |
| MF | GO:0004476 | mannose-6-phosphate isomerase activity | IEP | Enrichment |
| MF | GO:0004486 | methylenetetrahydrofolate dehydrogenase [NAD(P)+] activity | IEP | Enrichment |
| MF | GO:0004488 | methylenetetrahydrofolate dehydrogenase (NADP+) activity | IEP | Enrichment |
| MF | GO:0004643 | phosphoribosylaminoimidazolecarboxamide formyltransferase activity | IEP | Enrichment |
| MF | GO:0004813 | alanine-tRNA ligase activity | IEP | Enrichment |
| MF | GO:0004834 | tryptophan synthase activity | IEP | Enrichment |
| MF | GO:0005198 | structural molecule activity | IEP | Enrichment |
| MF | GO:0005488 | binding | IEP | Enrichment |
| MF | GO:0005524 | ATP binding | IEP | Enrichment |
| MF | GO:0005536 | glucose binding | IEP | Enrichment |
| BP | GO:0006082 | organic acid metabolic process | IEP | Enrichment |
| BP | GO:0006139 | nucleobase-containing compound metabolic process | IEP | Enrichment |
| BP | GO:0006163 | purine nucleotide metabolic process | IEP | Enrichment |
| BP | GO:0006164 | purine nucleotide biosynthetic process | IEP | Enrichment |
| BP | GO:0006419 | alanyl-tRNA aminoacylation | IEP | Enrichment |
| BP | GO:0006457 | protein folding | IEP | Enrichment |
| BP | GO:0006568 | tryptophan metabolic process | IEP | Enrichment |
| BP | GO:0006586 | indolalkylamine metabolic process | IEP | Enrichment |
| BP | GO:0006606 | protein import into nucleus | IEP | Enrichment |
| BP | GO:0006725 | cellular aromatic compound metabolic process | IEP | Enrichment |
| BP | GO:0006753 | nucleoside phosphate metabolic process | IEP | Enrichment |
| BP | GO:0006754 | ATP biosynthetic process | IEP | Enrichment |
| BP | GO:0006807 | nitrogen compound metabolic process | IEP | Enrichment |
| BP | GO:0006810 | transport | IEP | Enrichment |
| BP | GO:0006812 | cation transport | IEP | Enrichment |
| BP | GO:0006886 | intracellular protein transport | IEP | Enrichment |
| BP | GO:0007275 | multicellular organism development | IEP | Enrichment |
| BP | GO:0008104 | protein localization | IEP | Enrichment |
| MF | GO:0008137 | NADH dehydrogenase (ubiquinone) activity | IEP | Enrichment |
| BP | GO:0008150 | biological_process | IEP | Enrichment |
| BP | GO:0008152 | metabolic process | IEP | Enrichment |
| MF | GO:0009055 | electron transfer activity | IEP | Enrichment |
| BP | GO:0009058 | biosynthetic process | IEP | Enrichment |
| BP | GO:0009059 | macromolecule biosynthetic process | IEP | Enrichment |
| BP | GO:0009072 | aromatic amino acid family metabolic process | IEP | Enrichment |
| BP | GO:0009117 | nucleotide metabolic process | IEP | Enrichment |
| BP | GO:0009141 | nucleoside triphosphate metabolic process | IEP | Enrichment |
| BP | GO:0009142 | nucleoside triphosphate biosynthetic process | IEP | Enrichment |
| BP | GO:0009144 | purine nucleoside triphosphate metabolic process | IEP | Enrichment |
| BP | GO:0009145 | purine nucleoside triphosphate biosynthetic process | IEP | Enrichment |
| BP | GO:0009150 | purine ribonucleotide metabolic process | IEP | Enrichment |
| BP | GO:0009152 | purine ribonucleotide biosynthetic process | IEP | Enrichment |
| BP | GO:0009165 | nucleotide biosynthetic process | IEP | Enrichment |
| BP | GO:0009199 | ribonucleoside triphosphate metabolic process | IEP | Enrichment |
| BP | GO:0009201 | ribonucleoside triphosphate biosynthetic process | IEP | Enrichment |
| BP | GO:0009205 | purine ribonucleoside triphosphate metabolic process | IEP | Enrichment |
| BP | GO:0009206 | purine ribonucleoside triphosphate biosynthetic process | IEP | Enrichment |
| BP | GO:0009259 | ribonucleotide metabolic process | IEP | Enrichment |
| BP | GO:0009260 | ribonucleotide biosynthetic process | IEP | Enrichment |
| BP | GO:0009555 | pollen development | IEP | Enrichment |
| BP | GO:0009891 | positive regulation of biosynthetic process | IEP | Enrichment |
| BP | GO:0009893 | positive regulation of metabolic process | IEP | Enrichment |
| BP | GO:0009987 | cellular process | IEP | Enrichment |
| BP | GO:0010557 | positive regulation of macromolecule biosynthetic process | IEP | Enrichment |
| BP | GO:0010604 | positive regulation of macromolecule metabolic process | IEP | Enrichment |
| BP | GO:0015031 | protein transport | IEP | Enrichment |
| MF | GO:0015252 | proton channel activity | IEP | Enrichment |
| BP | GO:0015985 | energy coupled proton transport, down electrochemical gradient | IEP | Enrichment |
| BP | GO:0015986 | ATP synthesis coupled proton transport | IEP | Enrichment |
| BP | GO:0016192 | vesicle-mediated transport | IEP | Enrichment |
| MF | GO:0016491 | oxidoreductase activity | IEP | Enrichment |
| MF | GO:0016645 | oxidoreductase activity, acting on the CH-NH group of donors | IEP | Enrichment |
| MF | GO:0016646 | oxidoreductase activity, acting on the CH-NH group of donors, NAD or NADP as acceptor | IEP | Enrichment |
| MF | GO:0016651 | oxidoreductase activity, acting on NAD(P)H | IEP | Enrichment |
| MF | GO:0016655 | oxidoreductase activity, acting on NAD(P)H, quinone or similar compound as acceptor | IEP | Enrichment |
| MF | GO:0016717 | oxidoreductase activity, acting on paired donors, with oxidation of a pair of donors resulting in the reduction of molecular oxygen to two molecules of water | IEP | Enrichment |
| MF | GO:0016742 | hydroxymethyl-, formyl- and related transferase activity | IEP | Enrichment |
| MF | GO:0016814 | hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in cyclic amidines | IEP | Enrichment |
| MF | GO:0017076 | purine nucleotide binding | IEP | Enrichment |
| BP | GO:0018130 | heterocycle biosynthetic process | IEP | Enrichment |
| MF | GO:0019238 | cyclohydrolase activity | IEP | Enrichment |
| BP | GO:0019438 | aromatic compound biosynthetic process | IEP | Enrichment |
| BP | GO:0019637 | organophosphate metabolic process | IEP | Enrichment |
| BP | GO:0019693 | ribose phosphate metabolic process | IEP | Enrichment |
| BP | GO:0019752 | carboxylic acid metabolic process | IEP | Enrichment |
| CC | GO:0030117 | membrane coat | IEP | Enrichment |
| CC | GO:0030120 | vesicle coat | IEP | Enrichment |
| CC | GO:0030126 | COPI vesicle coat | IEP | Enrichment |
| CC | GO:0030127 | COPII vesicle coat | IEP | Enrichment |
| MF | GO:0030554 | adenyl nucleotide binding | IEP | Enrichment |
| BP | GO:0031325 | positive regulation of cellular metabolic process | IEP | Enrichment |
| BP | GO:0031328 | positive regulation of cellular biosynthetic process | IEP | Enrichment |
| BP | GO:0032501 | multicellular organismal process | IEP | Enrichment |
| BP | GO:0032502 | developmental process | IEP | Enrichment |
| MF | GO:0032553 | ribonucleotide binding | IEP | Enrichment |
| MF | GO:0032555 | purine ribonucleotide binding | IEP | Enrichment |
| MF | GO:0032559 | adenyl ribonucleotide binding | IEP | Enrichment |
| BP | GO:0032784 | regulation of DNA-templated transcription, elongation | IEP | Enrichment |
| BP | GO:0032786 | positive regulation of DNA-templated transcription, elongation | IEP | Enrichment |
| BP | GO:0032968 | positive regulation of transcription elongation from RNA polymerase II promoter | IEP | Enrichment |
| BP | GO:0033036 | macromolecule localization | IEP | Enrichment |
| BP | GO:0033365 | protein localization to organelle | IEP | Enrichment |
| BP | GO:0034220 | ion transmembrane transport | IEP | Enrichment |
| BP | GO:0034243 | regulation of transcription elongation from RNA polymerase II promoter | IEP | Enrichment |
| BP | GO:0034504 | protein localization to nucleus | IEP | Enrichment |
| BP | GO:0034613 | cellular protein localization | IEP | Enrichment |
| BP | GO:0034641 | cellular nitrogen compound metabolic process | IEP | Enrichment |
| BP | GO:0034654 | nucleobase-containing compound biosynthetic process | IEP | Enrichment |
| MF | GO:0035639 | purine ribonucleoside triphosphate binding | IEP | Enrichment |
| MF | GO:0036094 | small molecule binding | IEP | Enrichment |
| BP | GO:0042430 | indole-containing compound metabolic process | IEP | Enrichment |
| MF | GO:0043167 | ion binding | IEP | Enrichment |
| MF | GO:0043168 | anion binding | IEP | Enrichment |
| BP | GO:0043436 | oxoacid metabolic process | IEP | Enrichment |
| BP | GO:0044237 | cellular metabolic process | IEP | Enrichment |
| BP | GO:0044238 | primary metabolic process | IEP | Enrichment |
| BP | GO:0044249 | cellular biosynthetic process | IEP | Enrichment |
| BP | GO:0044271 | cellular nitrogen compound biosynthetic process | IEP | Enrichment |
| BP | GO:0044281 | small molecule metabolic process | IEP | Enrichment |
| BP | GO:0045184 | establishment of protein localization | IEP | Enrichment |
| MF | GO:0045300 | acyl-[acyl-carrier-protein] desaturase activity | IEP | Enrichment |
| BP | GO:0045893 | positive regulation of transcription, DNA-templated | IEP | Enrichment |
| BP | GO:0045935 | positive regulation of nucleobase-containing compound metabolic process | IEP | Enrichment |
| BP | GO:0045944 | positive regulation of transcription by RNA polymerase II | IEP | Enrichment |
| BP | GO:0046034 | ATP metabolic process | IEP | Enrichment |
| BP | GO:0046390 | ribose phosphate biosynthetic process | IEP | Enrichment |
| BP | GO:0046483 | heterocycle metabolic process | IEP | Enrichment |
| BP | GO:0046907 | intracellular transport | IEP | Enrichment |
| MF | GO:0046933 | proton-transporting ATP synthase activity, rotational mechanism | IEP | Enrichment |
| MF | GO:0048029 | monosaccharide binding | IEP | Enrichment |
| BP | GO:0048229 | gametophyte development | IEP | Enrichment |
| BP | GO:0048518 | positive regulation of biological process | IEP | Enrichment |
| BP | GO:0048522 | positive regulation of cellular process | IEP | Enrichment |
| BP | GO:0048856 | anatomical structure development | IEP | Enrichment |
| MF | GO:0050136 | NADH dehydrogenase (quinone) activity | IEP | Enrichment |
| BP | GO:0051156 | glucose 6-phosphate metabolic process | IEP | Enrichment |
| BP | GO:0051170 | import into nucleus | IEP | Enrichment |
| BP | GO:0051173 | positive regulation of nitrogen compound metabolic process | IEP | Enrichment |
| BP | GO:0051179 | localization | IEP | Enrichment |
| BP | GO:0051234 | establishment of localization | IEP | Enrichment |
| BP | GO:0051254 | positive regulation of RNA metabolic process | IEP | Enrichment |
| MF | GO:0051536 | iron-sulfur cluster binding | IEP | Enrichment |
| MF | GO:0051540 | metal cluster binding | IEP | Enrichment |
| BP | GO:0051641 | cellular localization | IEP | Enrichment |
| BP | GO:0051649 | establishment of localization in cell | IEP | Enrichment |
| BP | GO:0055086 | nucleobase-containing small molecule metabolic process | IEP | Enrichment |
| MF | GO:0061608 | nuclear import signal receptor activity | IEP | Enrichment |
| MF | GO:0070001 | aspartic-type peptidase activity | IEP | Enrichment |
| MF | GO:0070569 | uridylyltransferase activity | IEP | Enrichment |
| BP | GO:0070727 | cellular macromolecule localization | IEP | Enrichment |
| BP | GO:0071702 | organic substance transport | IEP | Enrichment |
| BP | GO:0071704 | organic substance metabolic process | IEP | Enrichment |
| BP | GO:0071705 | nitrogen compound transport | IEP | Enrichment |
| BP | GO:0072521 | purine-containing compound metabolic process | IEP | Enrichment |
| BP | GO:0072522 | purine-containing compound biosynthetic process | IEP | Enrichment |
| BP | GO:0072594 | establishment of protein localization to organelle | IEP | Enrichment |
| BP | GO:0090407 | organophosphate biosynthetic process | IEP | Enrichment |
| MF | GO:0097159 | organic cyclic compound binding | IEP | Enrichment |
| MF | GO:0097367 | carbohydrate derivative binding | IEP | Enrichment |
| BP | GO:0098655 | cation transmembrane transport | IEP | Enrichment |
| BP | GO:0098660 | inorganic ion transmembrane transport | IEP | Enrichment |
| BP | GO:0098662 | inorganic cation transmembrane transport | IEP | Enrichment |
| MF | GO:0140142 | nucleocytoplasmic carrier activity | IEP | Enrichment |
| BP | GO:1901135 | carbohydrate derivative metabolic process | IEP | Enrichment |
| BP | GO:1901137 | carbohydrate derivative biosynthetic process | IEP | Enrichment |
| MF | GO:1901265 | nucleoside phosphate binding | IEP | Enrichment |
| BP | GO:1901293 | nucleoside phosphate biosynthetic process | IEP | Enrichment |
| BP | GO:1901360 | organic cyclic compound metabolic process | IEP | Enrichment |
| BP | GO:1901362 | organic cyclic compound biosynthetic process | IEP | Enrichment |
| MF | GO:1901363 | heterocyclic compound binding | IEP | Enrichment |
| BP | GO:1901564 | organonitrogen compound metabolic process | IEP | Enrichment |
| BP | GO:1901566 | organonitrogen compound biosynthetic process | IEP | Enrichment |
| BP | GO:1901576 | organic substance biosynthetic process | IEP | Enrichment |
| BP | GO:1902600 | proton transmembrane transport | IEP | Enrichment |
| BP | GO:1902680 | positive regulation of RNA biosynthetic process | IEP | Enrichment |
| BP | GO:1903508 | positive regulation of nucleic acid-templated transcription | IEP | Enrichment |
| No external refs found! |