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  5. Cpa|evm.model.tig00000498.93

Cpa|evm.model.tig00000498.93 (tig00000498_g1673.t1)


Aliases : tig00000498_g1673.t1

No description available


Gene families : OG_01_0000377 (OrthoFinder) Phylogenetic Tree(s): OG0000377_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Cpa|evm.model.tig00000498.93
Cluster HCCA: Cluster_45

Target Alias Description ECC score Gene Family Method Actions
Cre10.g441200 30790096 RNA processing.RNA decay.deadenylation-dependent... 0.05 OrthoFinder
Cz06g07110.t1 No alias La-type HTH domain [Interproscan]. 0.06 OrthoFinder
Cz13g03150.t1 No alias La protein, RNA-binding domain; RNA recognition motif... 0.04 OrthoFinder
Dusal.0100s00011.1 33202450 La-type HTH domain; RNA recognition motif domain; La... 0.02 OrthoFinder
Dusal.0336s00004.1 33190827 Hypothetical protein 0.02 OrthoFinder
EOD26743 No alias Protein of unknown function (DUF3223); La-type HTH... 0.05 OrthoFinder
OT_01G04880.1 No alias RNA recognition motif domain; La-type HTH domain [Interproscan]. 0.04 OrthoFinder
OT_18G00320.1 No alias La-type HTH domain [Interproscan]. 0.05 OrthoFinder
SymbC1.scaffold4617.10 4617.10 Hypothetical protein 0.01 OrthoFinder
Transcript_contig_8474 8474 RNA recognition motif domain; La-type HTH domain [Interproscan]. 0.02 OrthoFinder
Vocar.0001s1267.1 32884310 La-type HTH domain [Interproscan]. 0.03 OrthoFinder
Vocar.0024s0049.1 32890341 La protein, RNA-binding domain; RNA recognition motif... 0.02 OrthoFinder
XM_002500609.1 MICPUN_73028, 73028 Hypothetical protein 0.01 OrthoFinder
lcl|BLLF01000100.1_cds_GFH07526.1_2003 HaLaN_02341, GFH07526 HTH La-type RNA-binding domain-containing protein 0.03 OrthoFinder
lcl|BLLF01003364.1_cds_GFH27142.1_21619 HaLaN_25415, GFH27142 RNA binding protein 0.03 OrthoFinder
lcl|BLLF01003838.1_cds_GFH28342.1_22819 HaLaN_26819, GFH28342 HTH La-type RNA-binding domain-containing protein 0.04 OrthoFinder
lcl|LHPG02000008.1_cds_PRW56866.1_9788 PRW56866 La-related 1A isoform X1 0.07 OrthoFinder
lcl|LHPG02000011.1_cds_PRW45723.1_1269 PRW45723 La 1 0.04 OrthoFinder
lcl|VRMN01000001.1_cds_KAA8499276.1_8229 KAA8499276 RNA recognition motif domain; La-type HTH domain [Interproscan]. 0.03 OrthoFinder
lcl|VRMN01000004.1_cds_KAA8494867.1_3397 KAA8494867 Lupus La protein 0.02 OrthoFinder
lcl|VRMN01000006.1_cds_KAA8493506.1_4268 KAA8493506 La-related protein 0.02 OrthoFinder

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
BP GO:0000959 mitochondrial RNA metabolic process IEP Enrichment
MF GO:0003674 molecular_function IEP Enrichment
MF GO:0003676 nucleic acid binding IEP Enrichment
MF GO:0003677 DNA binding IEP Enrichment
MF GO:0003723 RNA binding IEP Enrichment
MF GO:0003743 translation initiation factor activity IEP Enrichment
MF GO:0003899 DNA-directed 5'-3' RNA polymerase activity IEP Enrichment
MF GO:0004512 inositol-3-phosphate synthase activity IEP Enrichment
MF GO:0004809 tRNA (guanine-N2-)-methyltransferase activity IEP Enrichment
MF GO:0005488 binding IEP Enrichment
MF GO:0005515 protein binding IEP Enrichment
MF GO:0005524 ATP binding IEP Enrichment
CC GO:0005575 cellular_component IEP Enrichment
CC GO:0005634 nucleus IEP Enrichment
CC GO:0005730 nucleolus IEP Enrichment
CC GO:0005739 mitochondrion IEP Enrichment
CC GO:0005852 eukaryotic translation initiation factor 3 complex IEP Enrichment
BP GO:0006020 inositol metabolic process IEP Enrichment
BP GO:0006021 inositol biosynthetic process IEP Enrichment
BP GO:0006066 alcohol metabolic process IEP Enrichment
BP GO:0006413 translational initiation IEP Enrichment
BP GO:0006886 intracellular protein transport IEP Enrichment
BP GO:0008104 protein localization IEP Enrichment
MF GO:0008134 transcription factor binding IEP Enrichment
MF GO:0008135 translation factor activity, RNA binding IEP Enrichment
BP GO:0008150 biological_process IEP Enrichment
BP GO:0008152 metabolic process IEP Enrichment
MF GO:0008170 N-methyltransferase activity IEP Enrichment
MF GO:0008173 RNA methyltransferase activity IEP Enrichment
MF GO:0008175 tRNA methyltransferase activity IEP Enrichment
MF GO:0008757 S-adenosylmethionine-dependent methyltransferase activity IEP Enrichment
BP GO:0009987 cellular process IEP Enrichment
BP GO:0015031 protein transport IEP Enrichment
BP GO:0016070 RNA metabolic process IEP Enrichment
MF GO:0016423 tRNA (guanine) methyltransferase activity IEP Enrichment
MF GO:0016597 amino acid binding IEP Enrichment
MF GO:0016741 transferase activity, transferring one-carbon groups IEP Enrichment
MF GO:0016743 carboxyl- or carbamoyltransferase activity IEP Enrichment
MF GO:0016779 nucleotidyltransferase activity IEP Enrichment
MF GO:0016872 intramolecular lyase activity IEP Enrichment
MF GO:0016887 ATPase IEP Enrichment
MF GO:0017076 purine nucleotide binding IEP Enrichment
BP GO:0019751 polyol metabolic process IEP Enrichment
MF GO:0030554 adenyl nucleotide binding IEP Enrichment
CC GO:0030684 preribosome IEP Enrichment
MF GO:0031072 heat shock protein binding IEP Enrichment
CC GO:0032040 small-subunit processome IEP Enrichment
MF GO:0032553 ribonucleotide binding IEP Enrichment
MF GO:0032555 purine ribonucleotide binding IEP Enrichment
MF GO:0032559 adenyl ribonucleotide binding IEP Enrichment
BP GO:0033036 macromolecule localization IEP Enrichment
MF GO:0034062 5'-3' RNA polymerase activity IEP Enrichment
BP GO:0034637 cellular carbohydrate biosynthetic process IEP Enrichment
MF GO:0035639 purine ribonucleoside triphosphate binding IEP Enrichment
MF GO:0036094 small molecule binding IEP Enrichment
MF GO:0043177 organic acid binding IEP Enrichment
CC GO:0043226 organelle IEP Enrichment
CC GO:0043227 membrane-bounded organelle IEP Enrichment
CC GO:0043229 intracellular organelle IEP Enrichment
CC GO:0043231 intracellular membrane-bounded organelle IEP Enrichment
BP GO:0044237 cellular metabolic process IEP Enrichment
BP GO:0044238 primary metabolic process IEP Enrichment
MF GO:0045182 translation regulator activity IEP Enrichment
BP GO:0045184 establishment of protein localization IEP Enrichment
BP GO:0046165 alcohol biosynthetic process IEP Enrichment
BP GO:0046173 polyol biosynthetic process IEP Enrichment
BP GO:0046907 intracellular transport IEP Enrichment
BP GO:0051641 cellular localization IEP Enrichment
BP GO:0051649 establishment of localization in cell IEP Enrichment
BP GO:0071702 organic substance transport IEP Enrichment
BP GO:0071705 nitrogen compound transport IEP Enrichment
MF GO:0090079 translation regulator activity, nucleic acid binding IEP Enrichment
BP GO:0090304 nucleic acid metabolic process IEP Enrichment
MF GO:0097159 organic cyclic compound binding IEP Enrichment
MF GO:0097367 carbohydrate derivative binding IEP Enrichment
MF GO:0097747 RNA polymerase activity IEP Enrichment
CC GO:0110165 cellular anatomical entity IEP Enrichment
MF GO:0140098 catalytic activity, acting on RNA IEP Enrichment
MF GO:0140101 catalytic activity, acting on a tRNA IEP Enrichment
MF GO:1901363 heterocyclic compound binding IEP Enrichment
BP GO:1901615 organic hydroxy compound metabolic process IEP Enrichment
BP GO:1901617 organic hydroxy compound biosynthetic process IEP Enrichment
CC GO:1990904 ribonucleoprotein complex IEP Enrichment
InterPro domains Description Start Stop
IPR006630 La_HTH 49 104
No external refs found!