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  5. lcl|LHPG02000006.1_cds_PRW57918.1_8647

lcl|LHPG02000006.1_cds_PRW57918.1_8647 (PRW57918)


Aliases : PRW57918

Description : DEAD-box ATP-dependent RNA helicase 16


Gene families : OG_01_0001024 (OrthoFinder) Phylogenetic Tree(s): OG0001024_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: lcl|LHPG02000006.1_cds_PRW57918.1_8647
Cluster HCCA: Cluster_54

Target Alias Description ECC score Gene Family Method Actions
Cre12.g526850 30793359 DEAD-box ATP-dependent RNA helicase 16 OS=Arabidopsis thaliana 0.03 OrthoFinder
PTI_02G06960.1 No alias Helicase, C-terminal; DEAD/DEAH box helicase domain... 0.02 OrthoFinder
Transcript_contig_57632 57632 DEAD/DEAH box helicase domain [Interproscan]. 0.01 OrthoFinder

Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEA Interproscan
MF GO:0005524 ATP binding IEA Interproscan
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Type GO Term Name Evidence Source
BP GO:0000272 polysaccharide catabolic process IEP Enrichment
MF GO:0003918 DNA topoisomerase type II (double strand cut, ATP-hydrolyzing) activity IEP Enrichment
MF GO:0004411 homogentisate 1,2-dioxygenase activity IEP Enrichment
MF GO:0004812 aminoacyl-tRNA ligase activity IEP Enrichment
MF GO:0004817 cysteine-tRNA ligase activity IEP Enrichment
MF GO:0004832 valine-tRNA ligase activity IEP Enrichment
MF GO:0005507 copper ion binding IEP Enrichment
BP GO:0006334 nucleosome assembly IEP Enrichment
BP GO:0006418 tRNA aminoacylation for protein translation IEP Enrichment
BP GO:0006423 cysteinyl-tRNA aminoacylation IEP Enrichment
BP GO:0006438 valyl-tRNA aminoacylation IEP Enrichment
BP GO:0006520 cellular amino acid metabolic process IEP Enrichment
BP GO:0006558 L-phenylalanine metabolic process IEP Enrichment
BP GO:0006559 L-phenylalanine catabolic process IEP Enrichment
BP GO:0006570 tyrosine metabolic process IEP Enrichment
BP GO:0006811 ion transport IEP Enrichment
BP GO:0006820 anion transport IEP Enrichment
MF GO:0008131 primary amine oxidase activity IEP Enrichment
MF GO:0008519 ammonium transmembrane transporter activity IEP Enrichment
BP GO:0009063 cellular amino acid catabolic process IEP Enrichment
BP GO:0009074 aromatic amino acid family catabolic process IEP Enrichment
BP GO:0010024 phytochromobilin biosynthetic process IEP Enrichment
MF GO:0015318 inorganic molecular entity transmembrane transporter activity IEP Enrichment
BP GO:0015696 ammonium transport IEP Enrichment
BP GO:0015698 inorganic anion transport IEP Enrichment
MF GO:0016161 beta-amylase activity IEP Enrichment
MF GO:0016636 oxidoreductase activity, acting on the CH-CH group of donors, iron-sulfur protein as acceptor IEP Enrichment
MF GO:0016638 oxidoreductase activity, acting on the CH-NH2 group of donors IEP Enrichment
MF GO:0016641 oxidoreductase activity, acting on the CH-NH2 group of donors, oxygen as acceptor IEP Enrichment
MF GO:0016874 ligase activity IEP Enrichment
MF GO:0016875 ligase activity, forming carbon-oxygen bonds IEP Enrichment
BP GO:0034660 ncRNA metabolic process IEP Enrichment
BP GO:0034728 nucleosome organization IEP Enrichment
BP GO:0043038 amino acid activation IEP Enrichment
BP GO:0043039 tRNA aminoacylation IEP Enrichment
MF GO:0046914 transition metal ion binding IEP Enrichment
MF GO:0048038 quinone binding IEP Enrichment
MF GO:0050897 cobalt ion binding IEP Enrichment
BP GO:0051202 phytochromobilin metabolic process IEP Enrichment
BP GO:0065004 protein-DNA complex assembly IEP Enrichment
BP GO:0071705 nitrogen compound transport IEP Enrichment
BP GO:0071824 protein-DNA complex subunit organization IEP Enrichment
BP GO:1901606 alpha-amino acid catabolic process IEP Enrichment
BP GO:1902221 erythrose 4-phosphate/phosphoenolpyruvate family amino acid metabolic process IEP Enrichment
BP GO:1902222 erythrose 4-phosphate/phosphoenolpyruvate family amino acid catabolic process IEP Enrichment
InterPro domains Description Start Stop
IPR001650 Helicase_C 257 406
IPR011545 DEAD/DEAH_box_helicase_dom 25 197
No external refs found!