Aliases : PRW58375
Description : Putative pre-mRNA-splicing factor ATP-dependent RNA helicase
Gene families : OG_01_0000042 (OrthoFinder) Phylogenetic Tree(s): OG0000042_tree
Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.
Type | Description | Actions |
---|---|---|
Neighborhood | HRR: lcl|LHPG02000005.1_cds_PRW58375.1_7631 | |
Cluster | HCCA: Cluster_51 |
Target | Alias | Description | ECC score | Gene Family Method | Actions |
---|---|---|---|---|---|
Cpa|evm.model.tig00000842.2 | tig00000842_g4821.t2 | Probable pre-mRNA-splicing factor ATP-dependent RNA... | 0.02 | OrthoFinder | |
Cpa|evm.model.tig00000984.27 | tig00000984_g6004.t1 | Pre-mRNA-splicing factor ATP-dependent RNA helicase... | 0.03 | OrthoFinder | |
Cpa|evm.model.tig00020531.53 | tig00020531_g10059.t1 | Pre-mRNA-splicing factor ATP-dependent RNA helicase... | 0.01 | OrthoFinder | |
Cpa|evm.model.tig00022075.25 | tig00022075_g23589.t1 | RNA processing.RNA splicing.spliceosome... | 0.03 | OrthoFinder | |
Cre07.g349100 | 30774605 | RNA processing.RNA splicing.spliceosome... | 0.05 | OrthoFinder | |
Cre07.g352251 | 30775310 | ATP-dependent RNA helicase DEAH13 OS=Arabidopsis thaliana | 0.04 | OrthoFinder | |
Cre08.g358563 | 30773457 | Probable pre-mRNA-splicing factor ATP-dependent RNA... | 0.03 | OrthoFinder | |
Cre24.g755347 | 30782914 | RNA processing.RNA splicing.spliceosome... | 0.03 | OrthoFinder | |
Cz02g22140.t1 | No alias | Helicase, C-terminal; Domain of unknown function... | 0.04 | OrthoFinder | |
Cz04g05220.t1 | No alias | Helicase, C-terminal; Domain of unknown function... | 0.02 | OrthoFinder | |
Cz05g31260.t1 | No alias | Helicase, C-terminal; Domain of unknown function... | 0.05 | OrthoFinder | |
Cz12g28100.t1 | No alias | Helicase, C-terminal; Domain of unknown function... | 0.02 | OrthoFinder | |
Cz14g08150.t1 | No alias | Helicase, C-terminal; Domain of unknown function... | 0.03 | OrthoFinder | |
Dusal.0003s00057.1 | 33187539 | Helicase, C-terminal; Domain of unknown function... | 0.02 | OrthoFinder | |
Dusal.0072s00015.1 | 33199066 | Helicase-associated domain; Helicase, C-terminal; Domain... | 0.02 | OrthoFinder | |
Dusal.0244s00011.1 | 33186504 | Helicase, C-terminal; DEAD/DEAH box helicase domain... | 0.05 | OrthoFinder | |
Dusal.0426s00003.1 | 33189094 | Helicase-associated domain; Helicase, C-terminal; Domain... | 0.02 | OrthoFinder | |
EOD10970 | No alias | Helicase, C-terminal; Domain of unknown function... | 0.02 | OrthoFinder | |
EOD17140 | No alias | AAA domain; Helicase, C-terminal; SET domain;... | 0.02 | OrthoFinder | |
EOD22735 | No alias | Helicase-associated domain; DEAD/DEAH box helicase... | 0.02 | OrthoFinder | |
EOD28324 | No alias | Helicase, C-terminal; Domain of unknown function... | 0.02 | OrthoFinder | |
EOD29635 | No alias | ATP-dependent RNA helicase [Ensembl]. | 0.01 | OrthoFinder | |
EOD31583 | No alias | Helicase, C-terminal; Domain of unknown function... | 0.04 | OrthoFinder | |
EOD37846 | No alias | ATP-dependent RNA helicase [Ensembl]. | 0.05 | OrthoFinder | |
OT_04G02170.1 | No alias | S1 domain; AAA+ ATPase domain; Helicase, C-terminal;... | 0.06 | OrthoFinder | |
OT_05G03840.1 | No alias | Helicase-associated domain; Helicase, C-terminal; Domain... | 0.07 | OrthoFinder | |
OT_08G03320.1 | No alias | Helicase-associated domain; Helicase, C-terminal; Domain... | 0.02 | OrthoFinder | |
OT_14G00410.1 | No alias | Helicase-associated domain; Helicase, C-terminal; Domain... | 0.02 | OrthoFinder | |
PTI_05G02970.1 | No alias | Helicase, C-terminal; Helicase-associated domain; Domain... | 0.03 | OrthoFinder | |
PTI_07G04380.1 | No alias | Helicase, C-terminal; Domain of unknown function... | 0.03 | OrthoFinder | |
PTI_11G03860.1 | No alias | Helicase, C-terminal; Helicase-associated domain; Domain... | 0.05 | OrthoFinder | |
Sro1676_g290440.1 | Contig3487.g27033 | Splicing factor ATP-dependent RNA helicase | 0.03 | OrthoFinder | |
Sro2910_g340090.1 | Contig1382.g12705 | Splicing factor ATP-dependent RNA helicase | 0.01 | OrthoFinder | |
Sro657_g182550.1 | Contig301.g3975 | Splicing factor ATP-dependent RNA helicase-like protein cdc28 | 0.02 | OrthoFinder | |
Sro834_g208730.1 | Contig2061.g17675 | Splicing factor ATP-dependent RNA helicase | 0.04 | OrthoFinder | |
SymbC1.scaffold3931.2 | 3931.2 | DEAD/DEAH box helicase domain; Helicase, C-terminal... | 0.03 | OrthoFinder | |
SymbC1.scaffold7362.3 | 7362.3 | AAA+ ATPase domain; Domain of unknown function DUF1605;... | 0.02 | OrthoFinder | |
SymbC1.scaffold847.12 | 847.12 | Domain of unknown function DUF1605; Helicase-associated... | 0.01 | OrthoFinder | |
TP20G00330.1 | No alias | Helicase-associated domain [Interproscan]. | 0.02 | OrthoFinder | |
Transcript_contig_53761 | 53761 | Helicase-associated domain; Helicase, C-terminal; Domain... | 0.02 | OrthoFinder | |
Transcript_contig_89480 | 89480 | Helicase-associated domain; Helicase, C-terminal; Domain... | 0.01 | OrthoFinder | |
Vocar.0005s0040.1 | 32884011 | Helicase-associated domain; Domain of unknown function... | 0.02 | OrthoFinder | |
Vocar.0005s0082.1 | 32884001 | Domain of unknown function DUF1605; Helicase,... | 0.02 | OrthoFinder | |
Vocar.0015s0262.1 | 32898968 | Helicase-associated domain; Domain of unknown function... | 0.03 | OrthoFinder | |
XM_002500528.1 | MICPUN_97165, 97165 | Helicase, C-terminal; Helicase-associated domain; Domain... | 0.03 | OrthoFinder | |
XM_002501417.1 | MICPUN_58037, 58037 | Helicase, C-terminal; Helicase-associated domain; Domain... | 0.05 | OrthoFinder | |
XM_002502185.1 | MICPUN_81845, 81845 | Helicase, C-terminal; Helicase-associated domain; Domain... | 0.05 | OrthoFinder | |
XM_002507667.1 | MICPUN_51830, 51830 | Helicase, C-terminal; Helicase-associated domain; Domain... | 0.02 | OrthoFinder | |
XM_002508712.1 | MICPUN_97967, 97967 | Helicase, C-terminal; Helicase-associated domain;... | 0.03 | OrthoFinder | |
XM_003057993.1 | MicpuC2_57106, 57106 | Helicase, C-terminal; Helicase-associated domain; Domain... | 0.02 | OrthoFinder | |
XM_003059475.1 | MicpuC2_18184, 18184 | AAA+ ATPase domain; Helicase, C-terminal;... | 0.02 | OrthoFinder | |
lcl|BLLF01001160.1_cds_GFH17514.1_11991 | HaLaN_14169, GFH17514 | Helicase-associated domain [Interproscan]. | 0.03 | OrthoFinder | |
lcl|BLLF01002785.1_cds_GFH25342.1_19819 | HaLaN_23284, GFH25342 | Helicase-associated domain; Domain of unknown function... | 0.02 | OrthoFinder | |
lcl|VRMN01000002.1_cds_KAA8497022.1_751 | KAA8497022 | ATP-dependent RNA helicase dhx8 | 0.02 | OrthoFinder | |
lcl|VRMN01000010.1_cds_KAA8492270.1_5453 | KAA8492270 | Putative pre-mRNA-splicing factor ATP-dependent RNA... | 0.03 | OrthoFinder |
Type | GO Term | Name | Evidence | Source |
---|---|---|---|---|
MF | GO:0003676 | nucleic acid binding | IEA | Interproscan |
MF | GO:0004386 | helicase activity | IEA | Interproscan |
MF | GO:0005524 | ATP binding | IEA | Interproscan |
Type | GO Term | Name | Evidence | Source |
---|---|---|---|---|
MF | GO:0003723 | RNA binding | IEP | Enrichment |
MF | GO:0003755 | peptidyl-prolyl cis-trans isomerase activity | IEP | Enrichment |
MF | GO:0003852 | 2-isopropylmalate synthase activity | IEP | Enrichment |
MF | GO:0003873 | 6-phosphofructo-2-kinase activity | IEP | Enrichment |
MF | GO:0003899 | DNA-directed 5'-3' RNA polymerase activity | IEP | Enrichment |
MF | GO:0004359 | glutaminase activity | IEP | Enrichment |
MF | GO:0004402 | histone acetyltransferase activity | IEP | Enrichment |
MF | GO:0004652 | polynucleotide adenylyltransferase activity | IEP | Enrichment |
MF | GO:0004827 | proline-tRNA ligase activity | IEP | Enrichment |
MF | GO:0004842 | ubiquitin-protein transferase activity | IEP | Enrichment |
MF | GO:0005515 | protein binding | IEP | Enrichment |
CC | GO:0005634 | nucleus | IEP | Enrichment |
CC | GO:0005732 | sno(s)RNA-containing ribonucleoprotein complex | IEP | Enrichment |
BP | GO:0006000 | fructose metabolic process | IEP | Enrichment |
BP | GO:0006081 | cellular aldehyde metabolic process | IEP | Enrichment |
BP | GO:0006139 | nucleobase-containing compound metabolic process | IEP | Enrichment |
BP | GO:0006351 | transcription, DNA-templated | IEP | Enrichment |
BP | GO:0006366 | transcription by RNA polymerase II | IEP | Enrichment |
BP | GO:0006396 | RNA processing | IEP | Enrichment |
BP | GO:0006433 | prolyl-tRNA aminoacylation | IEP | Enrichment |
BP | GO:0006464 | cellular protein modification process | IEP | Enrichment |
BP | GO:0006473 | protein acetylation | IEP | Enrichment |
BP | GO:0006475 | internal protein amino acid acetylation | IEP | Enrichment |
BP | GO:0006551 | leucine metabolic process | IEP | Enrichment |
BP | GO:0006725 | cellular aromatic compound metabolic process | IEP | Enrichment |
BP | GO:0006766 | vitamin metabolic process | IEP | Enrichment |
BP | GO:0006767 | water-soluble vitamin metabolic process | IEP | Enrichment |
BP | GO:0006807 | nitrogen compound metabolic process | IEP | Enrichment |
MF | GO:0008134 | transcription factor binding | IEP | Enrichment |
BP | GO:0008150 | biological_process | IEP | Enrichment |
BP | GO:0008152 | metabolic process | IEP | Enrichment |
MF | GO:0008170 | N-methyltransferase activity | IEP | Enrichment |
MF | GO:0008276 | protein methyltransferase activity | IEP | Enrichment |
BP | GO:0008612 | peptidyl-lysine modification to peptidyl-hypusine | IEP | Enrichment |
MF | GO:0008757 | S-adenosylmethionine-dependent methyltransferase activity | IEP | Enrichment |
BP | GO:0009058 | biosynthetic process | IEP | Enrichment |
BP | GO:0009098 | leucine biosynthetic process | IEP | Enrichment |
BP | GO:0009110 | vitamin biosynthetic process | IEP | Enrichment |
BP | GO:0009235 | cobalamin metabolic process | IEP | Enrichment |
BP | GO:0009236 | cobalamin biosynthetic process | IEP | Enrichment |
BP | GO:0009987 | cellular process | IEP | Enrichment |
BP | GO:0016070 | RNA metabolic process | IEP | Enrichment |
MF | GO:0016278 | lysine N-methyltransferase activity | IEP | Enrichment |
MF | GO:0016279 | protein-lysine N-methyltransferase activity | IEP | Enrichment |
BP | GO:0016567 | protein ubiquitination | IEP | Enrichment |
BP | GO:0016573 | histone acetylation | IEP | Enrichment |
MF | GO:0016627 | oxidoreductase activity, acting on the CH-CH group of donors | IEP | Enrichment |
MF | GO:0016740 | transferase activity | IEP | Enrichment |
MF | GO:0016772 | transferase activity, transferring phosphorus-containing groups | IEP | Enrichment |
MF | GO:0016779 | nucleotidyltransferase activity | IEP | Enrichment |
MF | GO:0016782 | transferase activity, transferring sulphur-containing groups | IEP | Enrichment |
MF | GO:0016811 | hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in linear amides | IEP | Enrichment |
MF | GO:0016853 | isomerase activity | IEP | Enrichment |
MF | GO:0016859 | cis-trans isomerase activity | IEP | Enrichment |
MF | GO:0017025 | TBP-class protein binding | IEP | Enrichment |
MF | GO:0017069 | snRNA binding | IEP | Enrichment |
MF | GO:0017070 | U6 snRNA binding | IEP | Enrichment |
MF | GO:0017150 | tRNA dihydrouridine synthase activity | IEP | Enrichment |
MF | GO:0018024 | histone-lysine N-methyltransferase activity | IEP | Enrichment |
BP | GO:0018130 | heterocycle biosynthetic process | IEP | Enrichment |
BP | GO:0018193 | peptidyl-amino acid modification | IEP | Enrichment |
BP | GO:0018205 | peptidyl-lysine modification | IEP | Enrichment |
BP | GO:0018393 | internal peptidyl-lysine acetylation | IEP | Enrichment |
BP | GO:0018394 | peptidyl-lysine acetylation | IEP | Enrichment |
BP | GO:0019438 | aromatic compound biosynthetic process | IEP | Enrichment |
MF | GO:0019787 | ubiquitin-like protein transferase activity | IEP | Enrichment |
MF | GO:0030623 | U5 snRNA binding | IEP | Enrichment |
BP | GO:0032446 | protein modification by small protein conjugation | IEP | Enrichment |
MF | GO:0034062 | 5'-3' RNA polymerase activity | IEP | Enrichment |
MF | GO:0034212 | peptide N-acetyltransferase activity | IEP | Enrichment |
CC | GO:0034457 | Mpp10 complex | IEP | Enrichment |
BP | GO:0034641 | cellular nitrogen compound metabolic process | IEP | Enrichment |
BP | GO:0034660 | ncRNA metabolic process | IEP | Enrichment |
MF | GO:0035596 | methylthiotransferase activity | IEP | Enrichment |
BP | GO:0036211 | protein modification process | IEP | Enrichment |
MF | GO:0042054 | histone methyltransferase activity | IEP | Enrichment |
BP | GO:0042364 | water-soluble vitamin biosynthetic process | IEP | Enrichment |
BP | GO:0042816 | vitamin B6 metabolic process | IEP | Enrichment |
BP | GO:0042819 | vitamin B6 biosynthetic process | IEP | Enrichment |
BP | GO:0042822 | pyridoxal phosphate metabolic process | IEP | Enrichment |
BP | GO:0042823 | pyridoxal phosphate biosynthetic process | IEP | Enrichment |
BP | GO:0043170 | macromolecule metabolic process | IEP | Enrichment |
CC | GO:0043226 | organelle | IEP | Enrichment |
CC | GO:0043227 | membrane-bounded organelle | IEP | Enrichment |
CC | GO:0043229 | intracellular organelle | IEP | Enrichment |
CC | GO:0043231 | intracellular membrane-bounded organelle | IEP | Enrichment |
BP | GO:0043412 | macromolecule modification | IEP | Enrichment |
BP | GO:0043543 | protein acylation | IEP | Enrichment |
BP | GO:0043631 | RNA polyadenylation | IEP | Enrichment |
BP | GO:0044237 | cellular metabolic process | IEP | Enrichment |
BP | GO:0044238 | primary metabolic process | IEP | Enrichment |
BP | GO:0044260 | cellular macromolecule metabolic process | IEP | Enrichment |
BP | GO:0044267 | cellular protein metabolic process | IEP | Enrichment |
BP | GO:0044281 | small molecule metabolic process | IEP | Enrichment |
BP | GO:0044283 | small molecule biosynthetic process | IEP | Enrichment |
BP | GO:0046184 | aldehyde biosynthetic process | IEP | Enrichment |
BP | GO:0046483 | heterocycle metabolic process | IEP | Enrichment |
MF | GO:0050497 | alkylthioltransferase activity | IEP | Enrichment |
MF | GO:0050660 | flavin adenine dinucleotide binding | IEP | Enrichment |
MF | GO:0051539 | 4 iron, 4 sulfur cluster binding | IEP | Enrichment |
MF | GO:0061733 | peptide-lysine-N-acetyltransferase activity | IEP | Enrichment |
MF | GO:0070566 | adenylyltransferase activity | IEP | Enrichment |
BP | GO:0071704 | organic substance metabolic process | IEP | Enrichment |
BP | GO:0090304 | nucleic acid metabolic process | IEP | Enrichment |
BP | GO:0097659 | nucleic acid-templated transcription | IEP | Enrichment |
MF | GO:0097747 | RNA polymerase activity | IEP | Enrichment |
MF | GO:0140096 | catalytic activity, acting on a protein | IEP | Enrichment |
MF | GO:0140098 | catalytic activity, acting on RNA | IEP | Enrichment |
MF | GO:0140296 | general transcription initiation factor binding | IEP | Enrichment |
BP | GO:1901360 | organic cyclic compound metabolic process | IEP | Enrichment |
BP | GO:1901362 | organic cyclic compound biosynthetic process | IEP | Enrichment |
BP | GO:1901564 | organonitrogen compound metabolic process | IEP | Enrichment |
BP | GO:1901617 | organic hydroxy compound biosynthetic process | IEP | Enrichment |
No external refs found! |