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  5. lcl|LHPG02000005.1_cds_PRW58237.1_8075

lcl|LHPG02000005.1_cds_PRW58237.1_8075 (PRW58237)


Aliases : PRW58237

Description : U3 small nucleolar RNA-associated 21-like protein


Gene families : OG_01_0002791 (OrthoFinder) Phylogenetic Tree(s): OG0002791_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: lcl|LHPG02000005.1_cds_PRW58237.1_8075
Cluster HCCA: Cluster_11

Target Alias Description ECC score Gene Family Method Actions
Cpa|evm.model.tig00021348.51 tig00021348_g20554.t1 No description available 0.07 OrthoFinder
Cre10.g466250 30790775 No description available 0.21 OrthoFinder
Cz08g20100.t1 No alias WD40 repeat; Small-subunit processome, Utp21 [Interproscan]. 0.16 OrthoFinder
Dusal.0063s00009.1 33196767 WD40 repeat; Small-subunit processome, Utp21 [Interproscan]. 0.05 OrthoFinder
EOD22329 No alias WD40 repeat; Small-subunit processome, Utp21 [Interproscan]. 0.07 OrthoFinder
OT_17G00290.1 No alias Small-subunit processome, Utp21; WD40 repeat;... 0.09 OrthoFinder
PTI_01G00980.1 No alias Small-subunit processome, Utp21; WD40 repeat [Interproscan]. 0.21 OrthoFinder
Sro1313_g261950.1 Contig4199.g31963 RNA-associated protein 21 homolog 0.2 OrthoFinder
TP02G03700.1 No alias WD40 repeat; Small-subunit processome, Utp21 [Interproscan]. 0.1 OrthoFinder
Transcript_contig_5700 5700 Hypothetical protein 0.06 OrthoFinder
Vocar.0029s0128.1 32887338 WD40 repeat; Small-subunit processome, Utp21 [Interproscan]. 0.07 OrthoFinder
XM_002508565.1 MICPUN_98006, 98006 Small-subunit processome, Utp21; WD40 repeat [Interproscan]. 0.15 OrthoFinder
lcl|BLLF01000022.1_cds_GFH06094.1_571 HaLaN_00667, GFH06094 Small-subunit processome, Utp21 [Interproscan]. 0.05 OrthoFinder
lcl|BLLF01001420.1_cds_GFH19190.1_13667 HaLaN_16097, GFH19190 U3 small nucleolar RNA-associated 21-like protein 0.07 OrthoFinder
lcl|VRMN01000009.1_cds_KAA8492447.1_9140 KAA8492447 WD repeat-containing protein 36 0.11 OrthoFinder

Type GO Term Name Evidence Source
MF GO:0005515 protein binding IEA Interproscan
BP GO:0006364 rRNA processing IEA Interproscan
CC GO:0032040 small-subunit processome IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0000166 nucleotide binding IEP Enrichment
BP GO:0000462 maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) IEP Enrichment
MF GO:0003676 nucleic acid binding IEP Enrichment
MF GO:0003723 RNA binding IEP Enrichment
MF GO:0003724 RNA helicase activity IEP Enrichment
MF GO:0003899 DNA-directed 5'-3' RNA polymerase activity IEP Enrichment
MF GO:0004386 helicase activity IEP Enrichment
MF GO:0004809 tRNA (guanine-N2-)-methyltransferase activity IEP Enrichment
MF GO:0004817 cysteine-tRNA ligase activity IEP Enrichment
MF GO:0005319 lipid transporter activity IEP Enrichment
MF GO:0005524 ATP binding IEP Enrichment
CC GO:0005634 nucleus IEP Enrichment
CC GO:0005730 nucleolus IEP Enrichment
BP GO:0006351 transcription, DNA-templated IEP Enrichment
BP GO:0006399 tRNA metabolic process IEP Enrichment
BP GO:0006423 cysteinyl-tRNA aminoacylation IEP Enrichment
BP GO:0006869 lipid transport IEP Enrichment
BP GO:0008033 tRNA processing IEP Enrichment
MF GO:0008094 ATPase, acting on DNA IEP Enrichment
MF GO:0008168 methyltransferase activity IEP Enrichment
MF GO:0008170 N-methyltransferase activity IEP Enrichment
MF GO:0008173 RNA methyltransferase activity IEP Enrichment
MF GO:0008686 3,4-dihydroxy-2-butanone-4-phosphate synthase activity IEP Enrichment
MF GO:0016741 transferase activity, transferring one-carbon groups IEP Enrichment
MF GO:0016779 nucleotidyltransferase activity IEP Enrichment
MF GO:0017076 purine nucleotide binding IEP Enrichment
BP GO:0018130 heterocycle biosynthetic process IEP Enrichment
BP GO:0019438 aromatic compound biosynthetic process IEP Enrichment
BP GO:0022613 ribonucleoprotein complex biogenesis IEP Enrichment
BP GO:0030490 maturation of SSU-rRNA IEP Enrichment
MF GO:0030515 snoRNA binding IEP Enrichment
MF GO:0030554 adenyl nucleotide binding IEP Enrichment
CC GO:0030688 preribosome, small subunit precursor IEP Enrichment
MF GO:0032553 ribonucleotide binding IEP Enrichment
MF GO:0032555 purine ribonucleotide binding IEP Enrichment
MF GO:0032559 adenyl ribonucleotide binding IEP Enrichment
BP GO:0032774 RNA biosynthetic process IEP Enrichment
MF GO:0034062 5'-3' RNA polymerase activity IEP Enrichment
BP GO:0034645 cellular macromolecule biosynthetic process IEP Enrichment
BP GO:0034654 nucleobase-containing compound biosynthetic process IEP Enrichment
MF GO:0035639 purine ribonucleoside triphosphate binding IEP Enrichment
MF GO:0036094 small molecule binding IEP Enrichment
BP GO:0042254 ribosome biogenesis IEP Enrichment
BP GO:0042255 ribosome assembly IEP Enrichment
BP GO:0042256 mature ribosome assembly IEP Enrichment
MF GO:0043021 ribonucleoprotein complex binding IEP Enrichment
MF GO:0043022 ribosome binding IEP Enrichment
MF GO:0043167 ion binding IEP Enrichment
MF GO:0043168 anion binding IEP Enrichment
CC GO:0043226 organelle IEP Enrichment
CC GO:0043227 membrane-bounded organelle IEP Enrichment
CC GO:0043229 intracellular organelle IEP Enrichment
CC GO:0043231 intracellular membrane-bounded organelle IEP Enrichment
BP GO:0044085 cellular component biogenesis IEP Enrichment
BP GO:0061024 membrane organization IEP Enrichment
BP GO:0070925 organelle assembly IEP Enrichment
BP GO:0071840 cellular component organization or biogenesis IEP Enrichment
MF GO:0097159 organic cyclic compound binding IEP Enrichment
MF GO:0097367 carbohydrate derivative binding IEP Enrichment
BP GO:0097659 nucleic acid-templated transcription IEP Enrichment
MF GO:0097747 RNA polymerase activity IEP Enrichment
BP GO:0120009 intermembrane lipid transfer IEP Enrichment
MF GO:0120013 lipid transfer activity IEP Enrichment
MF GO:0140097 catalytic activity, acting on DNA IEP Enrichment
MF GO:0140098 catalytic activity, acting on RNA IEP Enrichment
MF GO:1901265 nucleoside phosphate binding IEP Enrichment
BP GO:1901362 organic cyclic compound biosynthetic process IEP Enrichment
MF GO:1901363 heterocyclic compound binding IEP Enrichment
InterPro domains Description Start Stop
IPR007319 SSU_processome_Utp21 822 1096
IPR001680 WD40_repeat 520 551
IPR001680 WD40_repeat 598 634
No external refs found!