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  5. lcl|LHPG02000004.1_cds_PRW59338.1_7243

lcl|LHPG02000004.1_cds_PRW59338.1_7243 (PRW59338)


Aliases : PRW59338

Description : ATP-binding cassette transporter


Gene families : OG_01_0000036 (OrthoFinder) Phylogenetic Tree(s): OG0000036_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: lcl|LHPG02000004.1_cds_PRW59338.1_7243
Cluster HCCA: Cluster_22

Target Alias Description ECC score Gene Family Method Actions
Cpa|evm.model.tig00020961.3 tig00020961_g16623.t1 ABC transporter B family member 25 OS=Oryza sativa... 0.02 OrthoFinder
Cre02.g083354 30785555 Solute transport.primary active transport.ABC... 0.02 OrthoFinder
SymbC1.scaffold2069.6 2069.6 ABC transporter-like; PFTB repeat; Methyltransferase... 0.02 OrthoFinder

Type GO Term Name Evidence Source
MF GO:0005524 ATP binding IEA Interproscan
CC GO:0016021 integral component of membrane IEA Interproscan
MF GO:0016887 ATPase IEA Interproscan
MF GO:0042626 ATPase-coupled transmembrane transporter activity IEA Interproscan
BP GO:0055085 transmembrane transport IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0005044 scavenger receptor activity IEP Enrichment
MF GO:0016774 phosphotransferase activity, carboxyl group as acceptor IEP Enrichment
MF GO:0038024 cargo receptor activity IEP Enrichment
InterPro domains Description Start Stop
IPR003439 ABC_transporter-like_ATP-bd 1063 1211
IPR003439 ABC_transporter-like_ATP-bd 379 525
IPR011527 ABC1_TM_dom 30 292
IPR011527 ABC1_TM_dom 689 958
No external refs found!