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  5. lcl|LHPG02000004.1_cds_PRW59107.1_6866

lcl|LHPG02000004.1_cds_PRW59107.1_6866 (PRW59107)


Aliases : PRW59107

Description : DEAD-box ATP-dependent RNA helicase 7


Gene families : OG_01_0000947 (OrthoFinder) Phylogenetic Tree(s): OG0000947_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: lcl|LHPG02000004.1_cds_PRW59107.1_6866
Cluster HCCA: Cluster_11

Target Alias Description ECC score Gene Family Method Actions
Cpa|evm.model.tig00000093.151 tig00000093_g3579.t1 DEAD-box ATP-dependent RNA helicase 3A, chloroplastic OS=Zea mays 0.02 OrthoFinder
Cpa|evm.model.tig00020734.25 tig00020734_g13581.t1 DEAD-box ATP-dependent RNA helicase 53, mitochondrial... 0.06 OrthoFinder
Cre02.g118300 30784864 DEAD-box ATP-dependent RNA helicase 7 OS=Oryza sativa... 0.05 OrthoFinder
Cre17.g727700 30782559 DEAD-box ATP-dependent RNA helicase 3, chloroplastic... 0.02 OrthoFinder
Cz13g08080.t1 No alias DEAD/DEAH box helicase domain [Interproscan]. 0.17 OrthoFinder
Cz13g08090.t1 No alias Helicase, C-terminal; GUCT [Interproscan]. 0.12 OrthoFinder
Cz14g25080.t1 No alias Helicase, C-terminal; GUCT; DEAD/DEAH box helicase... 0.02 OrthoFinder
Dusal.0202s00008.1 33191697 GUCT; Helicase, C-terminal; DEAD/DEAH box helicase... 0.03 OrthoFinder
Dusal.0888s00003.1 33188564 Helicase, C-terminal; DEAD/DEAH box helicase domain... 0.03 OrthoFinder
OT_04G02790.1 No alias Helicase, C-terminal; GUCT; DEAD/DEAH box helicase... 0.16 OrthoFinder
OT_05G02140.1 No alias Helicase, C-terminal; GUCT; DEAD/DEAH box helicase... 0.11 OrthoFinder
PTI_09G04100.1 No alias GUCT; Helicase, C-terminal; DEAD/DEAH box helicase... 0.07 OrthoFinder
Sro1581_g283790.1 Contig585.g7354 Dependent RNA helicase 0.1 OrthoFinder
TP04G04540.1 No alias Helicase, C-terminal; DEAD/DEAH box helicase domain... 0.04 OrthoFinder
Transcript_contig_56946 56946 Helicase, C-terminal; GUCT; DEAD/DEAH box helicase... 0.03 OrthoFinder
Vocar.0033s0039.1 32886419 DEAD/DEAH box helicase domain; Helicase, C-terminal;... 0.07 OrthoFinder
XM_002507844.1 MICPUN_97749, 97749 Helicase, C-terminal; DEAD/DEAH box helicase domain;... 0.14 OrthoFinder
XM_003058030.1 MicpuC2_39273, 39273 GUCT; Helicase, C-terminal; DEAD/DEAH box helicase... 0.1 OrthoFinder
lcl|BLLF01000392.1_cds_GFH11311.1_5788 HaLaN_06792, GFH11311 DEAD box RNA helicase CiRH75 0.07 OrthoFinder
lcl|BLLF01001583.1_cds_GFH20145.1_14622 HaLaN_17222, GFH20145 GUCT; Helicase, C-terminal; DEAD/DEAH box helicase... 0.05 OrthoFinder
lcl|BLLF01002695.1_cds_GFH25028.1_19505 HaLaN_22919, GFH25028 GUCT; Helicase, C-terminal; DEAD/DEAH box helicase... 0.09 OrthoFinder
lcl|BLLF01004392.1_cds_GFH29513.1_23990 HaLaN_28189, GFH29513 GUCT; Helicase, C-terminal; DEAD/DEAH box helicase... 0.03 OrthoFinder
lcl|VRMN01000009.1_cds_KAA8492593.1_9286 KAA8492593 Nucleolar RNA helicase 2 0.05 OrthoFinder
lcl|VRMN01000013.1_cds_KAA8491440.1_6250 KAA8491440 Nucleolar RNA helicase 2 0.03 OrthoFinder

Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEA Interproscan
MF GO:0003723 RNA binding IEA Interproscan
MF GO:0004386 helicase activity IEA Interproscan
MF GO:0005524 ATP binding IEA Interproscan
CC GO:0005634 nucleus IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0000030 mannosyltransferase activity IEP Enrichment
BP GO:0000462 maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) IEP Enrichment
MF GO:0003724 RNA helicase activity IEP Enrichment
MF GO:0003887 DNA-directed DNA polymerase activity IEP Enrichment
MF GO:0003899 DNA-directed 5'-3' RNA polymerase activity IEP Enrichment
MF GO:0004055 argininosuccinate synthase activity IEP Enrichment
MF GO:0004325 ferrochelatase activity IEP Enrichment
MF GO:0004527 exonuclease activity IEP Enrichment
MF GO:0004809 tRNA (guanine-N2-)-methyltransferase activity IEP Enrichment
CC GO:0005730 nucleolus IEP Enrichment
BP GO:0006139 nucleobase-containing compound metabolic process IEP Enrichment
BP GO:0006351 transcription, DNA-templated IEP Enrichment
BP GO:0006364 rRNA processing IEP Enrichment
BP GO:0006396 RNA processing IEP Enrichment
BP GO:0006525 arginine metabolic process IEP Enrichment
BP GO:0006526 arginine biosynthetic process IEP Enrichment
BP GO:0006725 cellular aromatic compound metabolic process IEP Enrichment
BP GO:0006783 heme biosynthetic process IEP Enrichment
BP GO:0006807 nitrogen compound metabolic process IEP Enrichment
MF GO:0008170 N-methyltransferase activity IEP Enrichment
BP GO:0009058 biosynthetic process IEP Enrichment
BP GO:0009059 macromolecule biosynthetic process IEP Enrichment
BP GO:0009987 cellular process IEP Enrichment
BP GO:0016070 RNA metabolic process IEP Enrichment
BP GO:0016072 rRNA metabolic process IEP Enrichment
MF GO:0016423 tRNA (guanine) methyltransferase activity IEP Enrichment
MF GO:0016779 nucleotidyltransferase activity IEP Enrichment
BP GO:0018130 heterocycle biosynthetic process IEP Enrichment
BP GO:0019438 aromatic compound biosynthetic process IEP Enrichment
BP GO:0022613 ribonucleoprotein complex biogenesis IEP Enrichment
CC GO:0030176 integral component of endoplasmic reticulum membrane IEP Enrichment
BP GO:0030490 maturation of SSU-rRNA IEP Enrichment
MF GO:0030515 snoRNA binding IEP Enrichment
CC GO:0030684 preribosome IEP Enrichment
CC GO:0030688 preribosome, small subunit precursor IEP Enrichment
CC GO:0031227 intrinsic component of endoplasmic reticulum membrane IEP Enrichment
BP GO:0032774 RNA biosynthetic process IEP Enrichment
MF GO:0034062 5'-3' RNA polymerase activity IEP Enrichment
BP GO:0034470 ncRNA processing IEP Enrichment
BP GO:0034641 cellular nitrogen compound metabolic process IEP Enrichment
BP GO:0034645 cellular macromolecule biosynthetic process IEP Enrichment
BP GO:0034654 nucleobase-containing compound biosynthetic process IEP Enrichment
BP GO:0034660 ncRNA metabolic process IEP Enrichment
BP GO:0042168 heme metabolic process IEP Enrichment
BP GO:0042254 ribosome biogenesis IEP Enrichment
BP GO:0042255 ribosome assembly IEP Enrichment
BP GO:0042256 mature ribosome assembly IEP Enrichment
BP GO:0042440 pigment metabolic process IEP Enrichment
MF GO:0043021 ribonucleoprotein complex binding IEP Enrichment
MF GO:0043022 ribosome binding IEP Enrichment
BP GO:0043170 macromolecule metabolic process IEP Enrichment
BP GO:0044085 cellular component biogenesis IEP Enrichment
BP GO:0044237 cellular metabolic process IEP Enrichment
BP GO:0044249 cellular biosynthetic process IEP Enrichment
BP GO:0044271 cellular nitrogen compound biosynthetic process IEP Enrichment
MF GO:0044877 protein-containing complex binding IEP Enrichment
BP GO:0046148 pigment biosynthetic process IEP Enrichment
BP GO:0046483 heterocycle metabolic process IEP Enrichment
BP GO:0070925 organelle assembly IEP Enrichment
BP GO:0071840 cellular component organization or biogenesis IEP Enrichment
BP GO:0090304 nucleic acid metabolic process IEP Enrichment
BP GO:0097659 nucleic acid-templated transcription IEP Enrichment
MF GO:0097747 RNA polymerase activity IEP Enrichment
MF GO:0140098 catalytic activity, acting on RNA IEP Enrichment
BP GO:1901360 organic cyclic compound metabolic process IEP Enrichment
BP GO:1901362 organic cyclic compound biosynthetic process IEP Enrichment
BP GO:1901576 organic substance biosynthetic process IEP Enrichment
CC GO:1990904 ribonucleoprotein complex IEP Enrichment
InterPro domains Description Start Stop
IPR011545 DEAD/DEAH_box_helicase_dom 114 293
IPR012562 GUCT 529 629
IPR001650 Helicase_C 338 440
No external refs found!