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  5. lcl|LHPG02000003.1_cds_PRW59844.1_6466

lcl|LHPG02000003.1_cds_PRW59844.1_6466 (PRW59844)


Aliases : PRW59844

Description : Transcription elongation factor SPT5-like protein 1


Gene families : OG_01_0002170 (OrthoFinder) Phylogenetic Tree(s): OG0002170_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: lcl|LHPG02000003.1_cds_PRW59844.1_6466
Cluster HCCA: Cluster_54

Target Alias Description ECC score Gene Family Method Actions
EOD20335 No alias Spt5 C-terminal nonapeptide repeat binding Spt4; NGN... 0.01 OrthoFinder
EOD26718 No alias NGN domain [Interproscan]. 0.03 OrthoFinder
Sro107_g053710.1 Contig1548.g14046 Putative transcription elongation factor SPT5 homolog 0.02 OrthoFinder
SymbC1.scaffold2363.10 2363.10 KOW [Interproscan]. 0.02 OrthoFinder

Type GO Term Name Evidence Source
CC GO:0016020 membrane IEA Interproscan
MF GO:0022857 transmembrane transporter activity IEA Interproscan
BP GO:0055085 transmembrane transport IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0005516 calmodulin binding IEP Enrichment
CC GO:0005892 acetylcholine-gated channel complex IEP Enrichment
BP GO:0009890 negative regulation of biosynthetic process IEP Enrichment
BP GO:0009892 negative regulation of metabolic process IEP Enrichment
BP GO:0010558 negative regulation of macromolecule biosynthetic process IEP Enrichment
BP GO:0010605 negative regulation of macromolecule metabolic process IEP Enrichment
BP GO:0016197 endosomal transport IEP Enrichment
BP GO:0016482 cytosolic transport IEP Enrichment
CC GO:0030906 retromer, cargo-selective complex IEP Enrichment
BP GO:0031324 negative regulation of cellular metabolic process IEP Enrichment
BP GO:0031327 negative regulation of cellular biosynthetic process IEP Enrichment
CC GO:0034702 ion channel complex IEP Enrichment
BP GO:0042147 retrograde transport, endosome to Golgi IEP Enrichment
CC GO:0043235 receptor complex IEP Enrichment
BP GO:0045892 negative regulation of transcription, DNA-templated IEP Enrichment
BP GO:0045934 negative regulation of nucleobase-containing compound metabolic process IEP Enrichment
BP GO:0048519 negative regulation of biological process IEP Enrichment
BP GO:0048523 negative regulation of cellular process IEP Enrichment
BP GO:0051172 negative regulation of nitrogen compound metabolic process IEP Enrichment
BP GO:0051253 negative regulation of RNA metabolic process IEP Enrichment
CC GO:0098796 membrane protein complex IEP Enrichment
CC GO:0098797 plasma membrane protein complex IEP Enrichment
CC GO:0098802 plasma membrane signaling receptor complex IEP Enrichment
CC GO:1902495 transmembrane transporter complex IEP Enrichment
BP GO:1902679 negative regulation of RNA biosynthetic process IEP Enrichment
BP GO:1903507 negative regulation of nucleic acid-templated transcription IEP Enrichment
CC GO:1990351 transporter complex IEP Enrichment
BP GO:2000113 negative regulation of cellular macromolecule biosynthetic process IEP Enrichment
InterPro domains Description Start Stop
IPR029485 CAT_C 2135 2183
IPR002293 AA/rel_permease1 1705 2100
IPR005100 NGN-domain 190 274
IPR002035 VWF_A 1212 1407
IPR022581 Spt5_N 84 184
No external refs found!