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  5. Cpa|evm.model.tig00000057.93

Cpa|evm.model.tig00000057.93 (tig00000057_g112.t1)


Aliases : tig00000057_g112.t1

Description : DNA mismatch repair protein PMS1 OS=Arabidopsis thaliana


Gene families : OG_01_0000591 (OrthoFinder) Phylogenetic Tree(s): OG0000591_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Cpa|evm.model.tig00000057.93
Cluster HCCA: Cluster_126

Target Alias Description ECC score Gene Family Method Actions
Cpa|evm.model.tig00000042.248 tig00000042_g15651.t1 DNA mismatch repair protein MLH3 OS=Arabidopsis thaliana 0.03 OrthoFinder
Cre01.g036050 30789431, MLH1 DNA damage response.DNA repair mechanisms.mismatch... 0.02 OrthoFinder
Cre04.g227000 30791345 DNA damage response.DNA repair mechanisms.mismatch... 0.03 OrthoFinder
Cz09g18150.t1 No alias DNA mismatch repair protein, S5 domain 2-like;... 0.03 OrthoFinder
EOD06196 No alias DNA mismatch repair protein Mlh1, C-terminal [Interproscan]. 0.02 OrthoFinder
EOD22530 No alias Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase... 0.03 OrthoFinder
EOD30362 No alias Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase;... 0.02 OrthoFinder
EOD41900 No alias MutL, C-terminal, dimerisation; Histidine kinase-, DNA... 0.01 OrthoFinder
OT_06G04020.1 No alias MutL, C-terminal, dimerisation; DNA mismatch repair... 0.03 OrthoFinder
Transcript_contig_89581 89581 MutL, C-terminal, dimerisation [Interproscan]. 0.01 OrthoFinder
Vocar.0001s0720.1 32884462 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase;... 0.03 OrthoFinder
XM_002503161.1 MICPUN_96433, 96433 DNA mismatch repair and recombination (MLH1) 0.04 OrthoFinder
XM_003061181.1 MicpuC2_44648, 44648 DNA mismatch repair and recombination (Mlh1) 0.03 OrthoFinder
XM_003061945.1 MicpuC2_4434, 4434 DNA mismatch repair protein, MLH2/PMS1/Pms2 family (Pms1) 0.02 OrthoFinder

Type GO Term Name Evidence Source
MF GO:0005524 ATP binding IEA Interproscan
BP GO:0006298 mismatch repair IEA Interproscan
MF GO:0030983 mismatched DNA binding IEA Interproscan
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Type GO Term Name Evidence Source
CC GO:0000808 origin recognition complex IEP Enrichment
MF GO:0003678 DNA helicase activity IEP Enrichment
MF GO:0003824 catalytic activity IEP Enrichment
MF GO:0003916 DNA topoisomerase activity IEP Enrichment
MF GO:0003918 DNA topoisomerase type II (double strand cut, ATP-hydrolyzing) activity IEP Enrichment
MF GO:0003924 GTPase activity IEP Enrichment
MF GO:0003950 NAD+ ADP-ribosyltransferase activity IEP Enrichment
CC GO:0005634 nucleus IEP Enrichment
CC GO:0005694 chromosome IEP Enrichment
BP GO:0006260 DNA replication IEP Enrichment
MF GO:0008094 ATPase, acting on DNA IEP Enrichment
BP GO:0009059 macromolecule biosynthetic process IEP Enrichment
MF GO:0016462 pyrophosphatase activity IEP Enrichment
MF GO:0016763 pentosyltransferase activity IEP Enrichment
MF GO:0016817 hydrolase activity, acting on acid anhydrides IEP Enrichment
MF GO:0016818 hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides IEP Enrichment
MF GO:0016853 isomerase activity IEP Enrichment
MF GO:0016887 ATPase IEP Enrichment
MF GO:0017111 nucleoside-triphosphatase activity IEP Enrichment
BP GO:0034645 cellular macromolecule biosynthetic process IEP Enrichment
MF GO:0043138 3'-5' DNA helicase activity IEP Enrichment
CC GO:0043226 organelle IEP Enrichment
CC GO:0043227 membrane-bounded organelle IEP Enrichment
CC GO:0043229 intracellular organelle IEP Enrichment
CC GO:0043231 intracellular membrane-bounded organelle IEP Enrichment
BP GO:0051259 protein complex oligomerization IEP Enrichment
BP GO:0051260 protein homooligomerization IEP Enrichment
BP GO:0065003 protein-containing complex assembly IEP Enrichment
MF GO:0140097 catalytic activity, acting on DNA IEP Enrichment
InterPro domains Description Start Stop
IPR013507 DNA_mismatch_S5_2-like 166 291
IPR014790 MutL_C 482 597
No external refs found!