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  5. lcl|LHPG02000003.1_cds_PRW59716.1_6391

lcl|LHPG02000003.1_cds_PRW59716.1_6391 (PRW59716)


Aliases : PRW59716

Description : Lipoxygenase homology domain-containing 1 isoform B


Gene families : OG_01_0000109 (OrthoFinder) Phylogenetic Tree(s): OG0000109_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: lcl|LHPG02000003.1_cds_PRW59716.1_6391
Cluster HCCA: Cluster_28

Target Alias Description ECC score Gene Family Method Actions
Cpa|evm.model.tig00000042.33 tig00000042_g15425.t1 No description available 0.02 OrthoFinder
Cpa|evm.model.tig00000042.34 tig00000042_g15425.t1 Calpain-type cysteine protease DEK1 OS=Zea mays 0.01 OrthoFinder
Cpa|evm.model.tig00000178.39 tig00000178_g12750.t1 Cilia- and flagella-associated protein 44... 0.02 OrthoFinder
Cpa|evm.model.tig00001024.12 tig00001024_g6321.t1 No description available 0.01 OrthoFinder
Cre06.g303400 30779939, FAP16 No description available 0.01 OrthoFinder
Cz01g41160.t1 No alias WD40 repeat; HELP [Interproscan]. 0.03 OrthoFinder
Cz01g41170.t1 No alias WD40 repeat; PLAT/LH2 domain [Interproscan]. 0.03 OrthoFinder
Cz05g14030.t1 No alias HELP; Anaphase-promoting complex subunit 4, WD40 domain;... 0.02 OrthoFinder
Cz11g19130.t1 No alias WD40 repeat; Anaphase-promoting complex subunit 4, WD40... 0.03 OrthoFinder
Dusal.0100s00008.1 33202476 HELP [Interproscan]. 0.04 OrthoFinder
Dusal.0100s00010.1 33202474 Hypothetical protein 0.01 OrthoFinder
Dusal.0177s00014.1 33189755 WD40 repeat; PLAT/LH2 domain [Interproscan]. 0.02 OrthoFinder
Dusal.0177s00015.1 33189759 HELP [Interproscan]. 0.05 OrthoFinder
Dusal.0285s00022.1 33192887 HELP [Interproscan]. 0.04 OrthoFinder
EOD39577 No alias HELP [Interproscan]. 0.01 OrthoFinder
Vocar.0029s0133.1 32887586 WD40 repeat [Interproscan]. 0.01 OrthoFinder
XM_002502455.1 MICPUN_58565, 58565 HELP; PLAT/LH2 domain; WD40 repeat [Interproscan]. 0.02 OrthoFinder
XM_002508893.1 MICPUN_52616, 52616 Hypothetical protein 0.02 OrthoFinder
XM_003058024.1 MicpuC2_57171, 57171 PLAT/LH2 domain; Pleckstrin homology domain [Interproscan]. 0.02 OrthoFinder
XM_003062633.1 MicpuC2_4590, 4590 WD40 repeat [Interproscan]. 0.01 OrthoFinder
XM_003063748.1 MicpuC2_42955, 42955 HELP; WD40 repeat [Interproscan]. 0.02 OrthoFinder

Type GO Term Name Evidence Source
MF GO:0005515 protein binding IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0003774 motor activity IEP Enrichment
MF GO:0003777 microtubule motor activity IEP Enrichment
MF GO:0004252 serine-type endopeptidase activity IEP Enrichment
CC GO:0005875 microtubule associated complex IEP Enrichment
BP GO:0006928 movement of cell or subcellular component IEP Enrichment
BP GO:0007017 microtubule-based process IEP Enrichment
BP GO:0007018 microtubule-based movement IEP Enrichment
MF GO:0008236 serine-type peptidase activity IEP Enrichment
MF GO:0017111 nucleoside-triphosphatase activity IEP Enrichment
MF GO:0017171 serine hydrolase activity IEP Enrichment
CC GO:0030286 dynein complex IEP Enrichment
CC GO:1902494 catalytic complex IEP Enrichment
InterPro domains Description Start Stop
IPR001024 PLAT/LH2_dom 920 1018
IPR001024 PLAT/LH2_dom 412 520
IPR001024 PLAT/LH2_dom 1365 1470
IPR001024 PLAT/LH2_dom 1171 1274
IPR001024 PLAT/LH2_dom 784 898
IPR001024 PLAT/LH2_dom 251 361
IPR001849 PH_domain 58 177
No external refs found!