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Aliases : PRW60378
Description : Histone H2B
Gene families : OG_01_0000102 (OrthoFinder) Phylogenetic Tree(s): OG0000102_tree
Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.
| Type | Description | Actions |
|---|---|---|
| Neighborhood | HRR: lcl|LHPG02000002.1_cds_PRW60378.1_4501 | |
| Cluster | HCCA: Cluster_43 |
| Target | Alias | Description | ECC score | Gene Family Method | Actions |
|---|---|---|---|---|---|
| Cpa|evm.model.tig00000944.18 | tig00000944_g5940.t1 | Chromatin organisation.histones.H2B-type histone | 0.02 | OrthoFinder | |
| Cre06.g264900 | 30779615, HTB13 | Chromatin organisation.histones.H2B-type histone | 0.05 | OrthoFinder | |
| Cre06.g271376 | 30780144 | Chromatin organisation.histones.H2B-type histone | 0.04 | OrthoFinder | |
| Cre06.g273850 | 30778673, HTB7 | Chromatin organisation.histones.H2B-type histone | 0.02 | OrthoFinder | |
| Cre06.g274250 | 30779155 | Chromatin organisation.histones.H2B-type histone | 0.03 | OrthoFinder | |
| Cre06.g275800 | 30778604 | Chromatin organisation.histones.H2B-type histone | 0.02 | OrthoFinder | |
| Cre06.g276550 | 30778890, HTB23 | Chromatin organisation.histones.H2B-type histone | 0.05 | OrthoFinder | |
| Cre12.g504700 | 30793271 | Chromatin organisation.histones.H2B-type histone | 0.03 | OrthoFinder | |
| Cre12.g506200 | 30793175 | Chromatin organisation.histones.H2B-type histone | 0.03 | OrthoFinder | |
| Cre13.g570050 | 30784307, HTB2 | Chromatin organisation.histones.H2B-type histone | 0.05 | OrthoFinder | |
| Cre13.g590750 | 30783880, HTB37 | Chromatin organisation.histones.H2B-type histone | 0.02 | OrthoFinder | |
| Cre13.g591200 | 30784473, HTB38 | Chromatin organisation.histones.H2B-type histone | 0.04 | OrthoFinder | |
| Cre17.g709150 | 30782749 | Chromatin organisation.histones.H2B-type histone | 0.05 | OrthoFinder | |
| Cre17.g710450 | 30782433 | Chromatin organisation.histones.H2B-type histone | 0.05 | OrthoFinder | |
| Cre17.g711750 | 30781954 | Chromatin organisation.histones.H2B-type histone | 0.05 | OrthoFinder | |
| Cre17.g713450 | 30782606 | Chromatin organisation.histones.H2B-type histone | 0.03 | OrthoFinder | |
| Cre17.g714050 | 30782614, HTB21 | Chromatin organisation.histones.H2B-type histone | 0.05 | OrthoFinder | |
| Cz02g02060.t1 | No alias | Histone H2A/H2B/H3 [Interproscan]. | 0.03 | OrthoFinder | |
| Cz05g04190.t1 | No alias | Histone H2A/H2B/H3 [Interproscan]. | 0.04 | OrthoFinder | |
| Cz07g08190.t1 | No alias | Histone H2A/H2B/H3 [Interproscan]. | 0.04 | OrthoFinder | |
| Cz08g27120.t1 | No alias | Histone H2A/H2B/H3 [Interproscan]. | 0.04 | OrthoFinder | |
| Cz18g11110.t1 | No alias | Histone H2A/H2B/H3 [Interproscan]. | 0.04 | OrthoFinder | |
| EOD16252 | No alias | Histone H2A/H2B/H3 [Interproscan]. | 0.02 | OrthoFinder | |
| EOD17479 | No alias | Histone H2A/H2B/H3 [Interproscan]. | 0.02 | OrthoFinder | |
| EOD18484 | No alias | Histone H2A/H2B/H3 [Interproscan]. | 0.02 | OrthoFinder | |
| EOD26824 | No alias | Putative histone H2B [Ensembl]. | 0.02 | OrthoFinder | |
| EOD41189 | No alias | Putative histone H2B [Ensembl]. | 0.01 | OrthoFinder | |
| OT_08G01920.1 | No alias | Histone H2A/H2B/H3 [Interproscan]. | 0.02 | OrthoFinder | |
| PTI_06G02120.1 | No alias | Histone H2A/H2B/H3 [Interproscan]. | 0.03 | OrthoFinder | |
| PTI_06G04930.1 | No alias | Histone H2A/H2B/H3 [Interproscan]. | 0.02 | OrthoFinder | |
| Sro1535_g280540.1 | Contig3021.g24091 | Histone H2B | 0.02 | OrthoFinder | |
| Sro1563_g282700.1 | Contig1017.g10180 | Histone H2B | 0.02 | OrthoFinder | |
| Sro228_g092710.1 | Contig1235.g11585 | Histone H2B | 0.02 | OrthoFinder | |
| Sro470_g149440.1 | Contig850.g9338 | Histone H2B | 0.02 | OrthoFinder | |
| TP05G07690.1 | No alias | Histone H2A/H2B/H3 [Interproscan]. | 0.02 | OrthoFinder | |
| Vocar.0016s0272.1 | 32898185 | Histone H2A/H2B/H3 [Interproscan]. | 0.02 | OrthoFinder | |
| Vocar.0027s0139.1 | 32887089 | Histone H2A/H2B/H3 [Interproscan]. | 0.03 | OrthoFinder | |
| XM_002503927.1 | MICPUN_108622, 108622 | Histone H2B | 0.03 | OrthoFinder | |
| XM_003055466.1 | MicpuC2_13212, 13212 | Histone H2B | 0.03 | OrthoFinder | |
| XM_003058473.1 | MicpuC2_58125, 58125 | Histone H2A/H2B/H3 [Interproscan]. | 0.03 | OrthoFinder | |
| XM_003061989.1 | MicpuC2_35705, 35705 | Histone H2A/H2B/H3 [Interproscan]. | 0.04 | OrthoFinder | |
| lcl|BLLF01000287.1_cds_GFH10110.1_4587 | HaLaN_05363, GFH10110 | Histone H2B | 0.02 | OrthoFinder | |
| lcl|LHPG02000007.1_cds_PRW57107.1_9026 | PRW57107 | Histone | 0.03 | OrthoFinder | |
| lcl|VRMN01000001.1_cds_KAA8498015.1_6968 | KAA8498015 | Histone H2B type 1-M | 0.02 | OrthoFinder |
| Type | GO Term | Name | Evidence | Source |
|---|---|---|---|---|
No GO annotation available for this sequence |
| Type | GO Term | Name | Evidence | Source |
|---|---|---|---|---|
| MF | GO:0000049 | tRNA binding | IEP | Enrichment |
| MF | GO:0000339 | RNA cap binding | IEP | Enrichment |
| MF | GO:0000340 | RNA 7-methylguanosine cap binding | IEP | Enrichment |
| CC | GO:0000786 | nucleosome | IEP | Enrichment |
| MF | GO:0003676 | nucleic acid binding | IEP | Enrichment |
| MF | GO:0003677 | DNA binding | IEP | Enrichment |
| MF | GO:0003729 | mRNA binding | IEP | Enrichment |
| MF | GO:0003918 | DNA topoisomerase type II (double strand cut, ATP-hydrolyzing) activity | IEP | Enrichment |
| MF | GO:0004812 | aminoacyl-tRNA ligase activity | IEP | Enrichment |
| BP | GO:0006099 | tricarboxylic acid cycle | IEP | Enrichment |
| BP | GO:0006418 | tRNA aminoacylation for protein translation | IEP | Enrichment |
| BP | GO:0006520 | cellular amino acid metabolic process | IEP | Enrichment |
| MF | GO:0008131 | primary amine oxidase activity | IEP | Enrichment |
| MF | GO:0008237 | metallopeptidase activity | IEP | Enrichment |
| MF | GO:0016638 | oxidoreductase activity, acting on the CH-NH2 group of donors | IEP | Enrichment |
| MF | GO:0016641 | oxidoreductase activity, acting on the CH-NH2 group of donors, oxygen as acceptor | IEP | Enrichment |
| MF | GO:0016791 | phosphatase activity | IEP | Enrichment |
| MF | GO:0016875 | ligase activity, forming carbon-oxygen bonds | IEP | Enrichment |
| MF | GO:0019211 | phosphatase activator activity | IEP | Enrichment |
| MF | GO:0030246 | carbohydrate binding | IEP | Enrichment |
| MF | GO:0030247 | polysaccharide binding | IEP | Enrichment |
| CC | GO:0032991 | protein-containing complex | IEP | Enrichment |
| CC | GO:0032993 | protein-DNA complex | IEP | Enrichment |
| MF | GO:0042578 | phosphoric ester hydrolase activity | IEP | Enrichment |
| BP | GO:0043038 | amino acid activation | IEP | Enrichment |
| BP | GO:0043039 | tRNA aminoacylation | IEP | Enrichment |
| CC | GO:0044815 | DNA packaging complex | IEP | Enrichment |
| MF | GO:0048038 | quinone binding | IEP | Enrichment |
| MF | GO:0097159 | organic cyclic compound binding | IEP | Enrichment |
| MF | GO:1901363 | heterocyclic compound binding | IEP | Enrichment |
| MF | GO:2001070 | starch binding | IEP | Enrichment |
No InterPro domains available for this sequence
| No external refs found! |