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  5. lcl|LHPG02000001.1_cds_PRW61576.1_616

lcl|LHPG02000001.1_cds_PRW61576.1_616 (PRW61576)


Aliases : PRW61576

Description : Photosystem II stability assembly factor chloroplastic


Gene families : OG_01_0003736 (OrthoFinder) Phylogenetic Tree(s): OG0003736_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: lcl|LHPG02000001.1_cds_PRW61576.1_616
Cluster HCCA: Cluster_84

Target Alias Description ECC score Gene Family Method Actions
Cre06.g273700 30778394 Photosynthesis.photophosphorylation.photosystem... 0.03 OrthoFinder
Cz10g21040.t1 No alias Photosynthesis system II assembly factor... 0.05 OrthoFinder
Dusal.0002s00028.1 33187970 Photosynthesis system II assembly factor... 0.03 OrthoFinder
EOD42170 No alias Photosynthesis system II assembly factor... 0.02 OrthoFinder
PTI_13G02840.1 No alias Photosynthesis system II assembly factor... 0.02 OrthoFinder
Sro5_g004430.1 Contig4001.g30758 II stability/assembly factor HCF136, chloroplastic 0.02 OrthoFinder
TP22G01760.1 No alias Photosynthesis system II assembly factor... 0.02 OrthoFinder
Transcript_contig_55682 55682 Photosynthesis system II assembly factor... 0.02 OrthoFinder
Vocar.0002s0344.1 32890876 Photosynthesis system II assembly factor... 0.05 OrthoFinder
XM_002502020.1 MICPUN_58459, 58459 Photosynthesis system II assembly factor... 0.04 OrthoFinder
XM_003057421.1 MicpuC2_32576, 32576 Photosynthesis system II assembly factor... 0.03 OrthoFinder
lcl|VRMN01000002.1_cds_KAA8496427.1_156 KAA8496427 Photosystem II stability/assembly factor 0.03 OrthoFinder

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0003674 molecular_function IEP Enrichment
MF GO:0003690 double-stranded DNA binding IEP Enrichment
MF GO:0003723 RNA binding IEP Enrichment
MF GO:0003743 translation initiation factor activity IEP Enrichment
MF GO:0003746 translation elongation factor activity IEP Enrichment
MF GO:0004109 coproporphyrinogen oxidase activity IEP Enrichment
MF GO:0004181 metallocarboxypeptidase activity IEP Enrichment
MF GO:0004366 glycerol-3-phosphate O-acyltransferase activity IEP Enrichment
MF GO:0004553 hydrolase activity, hydrolyzing O-glycosyl compounds IEP Enrichment
MF GO:0004556 alpha-amylase activity IEP Enrichment
MF GO:0005261 cation channel activity IEP Enrichment
MF GO:0005509 calcium ion binding IEP Enrichment
CC GO:0005852 eukaryotic translation initiation factor 3 complex IEP Enrichment
BP GO:0005975 carbohydrate metabolic process IEP Enrichment
BP GO:0006298 mismatch repair IEP Enrichment
BP GO:0006414 translational elongation IEP Enrichment
BP GO:0006721 terpenoid metabolic process IEP Enrichment
BP GO:0006950 response to stress IEP Enrichment
MF GO:0008135 translation factor activity, RNA binding IEP Enrichment
MF GO:0008235 metalloexopeptidase activity IEP Enrichment
MF GO:0008374 O-acyltransferase activity IEP Enrichment
MF GO:0008685 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase activity IEP Enrichment
MF GO:0008942 nitrite reductase [NAD(P)H] activity IEP Enrichment
BP GO:0009150 purine ribonucleotide metabolic process IEP Enrichment
BP GO:0009259 ribonucleotide metabolic process IEP Enrichment
CC GO:0009521 photosystem IEP Enrichment
CC GO:0009523 photosystem II IEP Enrichment
CC GO:0009654 photosystem II oxygen evolving complex IEP Enrichment
MF GO:0015252 proton channel activity IEP Enrichment
BP GO:0015979 photosynthesis IEP Enrichment
BP GO:0016114 terpenoid biosynthetic process IEP Enrichment
MF GO:0016661 oxidoreductase activity, acting on other nitrogenous compounds as donors IEP Enrichment
MF GO:0016798 hydrolase activity, acting on glycosyl bonds IEP Enrichment
MF GO:0016849 phosphorus-oxygen lyase activity IEP Enrichment
MF GO:0016853 isomerase activity IEP Enrichment
MF GO:0016854 racemase and epimerase activity IEP Enrichment
MF GO:0016857 racemase and epimerase activity, acting on carbohydrates and derivatives IEP Enrichment
BP GO:0019693 ribose phosphate metabolic process IEP Enrichment
CC GO:0019898 extrinsic component of membrane IEP Enrichment
MF GO:0030983 mismatched DNA binding IEP Enrichment
MF GO:0032977 membrane insertase activity IEP Enrichment
MF GO:0045182 translation regulator activity IEP Enrichment
BP GO:0046034 ATP metabolic process IEP Enrichment
MF GO:0046857 oxidoreductase activity, acting on other nitrogenous compounds as donors, with NAD or NADP as acceptor IEP Enrichment
MF GO:0046933 proton-transporting ATP synthase activity, rotational mechanism IEP Enrichment
BP GO:0050896 response to stimulus IEP Enrichment
MF GO:0070567 cytidylyltransferase activity IEP Enrichment
MF GO:0090079 translation regulator activity, nucleic acid binding IEP Enrichment
MF GO:0098809 nitrite reductase activity IEP Enrichment
MF GO:0140104 molecular carrier activity IEP Enrichment
MF GO:0140597 protein carrier activity IEP Enrichment
CC GO:1990204 oxidoreductase complex IEP Enrichment
InterPro domains Description Start Stop
IPR028203 PSII_CF48-like_dom 77 397
No external refs found!