lcl|LHPG02000001.1_cds_PRW61562.1_554 (PRW61562)

Aliases : PRW61562

Description : Structural maintenance of chromosomes 2-1 isoform B

Gene families : OG_01_0002043 (OrthoFinder) Phylogenetic Tree(s): OG0002043_tree

Sequence : coding (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: lcl\|LHPG02000001.1_cds_PRW61562.1_554
Cluster	HCCA: Cluster_43

Target	Alias	Description	ECC score	Gene Family Method
Cpa\|evm.model.tig00000615.55	tig00000615_g2585.t1	Cell cycle.mitosis and meiosis.chromatin...	0.04	OrthoFinder
Cre02.g086650	30785243, SMC2	Cell cycle.mitosis and meiosis.chromatin...	0.08	OrthoFinder
Cz10g09260.t1	No alias	RecF/RecN/SMC, N-terminal; SMCs flexible hinge [Interproscan].	0.08	OrthoFinder
Dusal.0010s00009.1	33196797	RecF/RecN/SMC, N-terminal; SMCs flexible hinge [Interproscan].	0.06	OrthoFinder
EOD10000	No alias	SMCs flexible hinge; RecF/RecN/SMC, N-terminal [Interproscan].	0.09	OrthoFinder
OT_04G00570.1	No alias	RecF/RecN/SMC, N-terminal; SMCs flexible hinge [Interproscan].	0.09	OrthoFinder
PTI_22G01140.1	No alias	RecF/RecN/SMC, N-terminal; SMCs flexible hinge [Interproscan].	0.06	OrthoFinder
Sro864_g212600.1	Contig2395.g19632	Mitotic chromosome and X-chromosome-associated protein mix-1	0.07	OrthoFinder
TP01G05320.1	No alias	RecF/RecN/SMC, N-terminal; SMCs flexible hinge [Interproscan].	0.05	OrthoFinder
Vocar.0004s0431.1	32890001	SMCs flexible hinge; RecF/RecN/SMC, N-terminal [Interproscan].	0.04	OrthoFinder
XM_002504700.1	MICPUN_97912, 97912	Condensin complex component	0.05	OrthoFinder
XM_003064603.1	MicpuC2_43587, 43587	Condensin complex component	0.03	OrthoFinder
lcl\|BLLF01000924.1_cds_GFH15948.1_10425	HaLaN_12279, GFH15948	SMC hinge domain-containing protein	0.02	OrthoFinder
lcl\|BLLF01000924.1_cds_GFH15949.1_10426	HaLaN_12280, GFH15949	Structural maintenance of chromosomes protein	0.02	OrthoFinder
lcl\|BLLF01001625.1_cds_GFH20392.1_14869	HaLaN_17503, GFH20392	Structural maintenance of chromosomes protein	0.01	OrthoFinder
lcl\|BLLF01001625.1_cds_GFH20393.1_14870	HaLaN_17504, GFH20393	Structural maintenance of chromosomes protein	0.04	OrthoFinder
lcl\|BLLF01003274.1_cds_GFH26889.1_21366	HaLaN_25113, GFH26889	SMC hinge domain-containing protein	0.02	OrthoFinder
lcl\|VRMN01000002.1_cds_KAA8497009.1_738	KAA8497009	Structural maintenance of chromosomes protein 2-1	0.07	OrthoFinder

Type	GO Term	Name	Evidence	Source
MF	GO:0000166	nucleotide binding	None	Extended
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0005488	binding	None	Extended
MF	GO:0005515	protein binding	IEA	Interproscan
MF	GO:0005524	ATP binding	IEA	Interproscan
CC	GO:0005575	cellular_component	None	Extended
CC	GO:0005694	chromosome	IEA	Interproscan
BP	GO:0006996	organelle organization	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0009987	cellular process	None	Extended
BP	GO:0016043	cellular component organization	None	Extended
MF	GO:0017076	purine nucleotide binding	None	Extended
MF	GO:0030554	adenyl nucleotide binding	None	Extended
MF	GO:0032553	ribonucleotide binding	None	Extended
MF	GO:0032555	purine ribonucleotide binding	None	Extended
MF	GO:0032559	adenyl ribonucleotide binding	None	Extended
MF	GO:0035639	purine ribonucleoside triphosphate binding	None	Extended
MF	GO:0036094	small molecule binding	None	Extended
MF	GO:0043167	ion binding	None	Extended
MF	GO:0043168	anion binding	None	Extended
CC	GO:0043226	organelle	None	Extended
CC	GO:0043228	non-membrane-bounded organelle	None	Extended
CC	GO:0043229	intracellular organelle	None	Extended
CC	GO:0043232	intracellular non-membrane-bounded organelle	None	Extended
BP	GO:0051276	chromosome organization	IEA	Interproscan
BP	GO:0071840	cellular component organization or biogenesis	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
MF	GO:0097367	carbohydrate derivative binding	None	Extended
CC	GO:0110165	cellular anatomical entity	None	Extended
MF	GO:1901265	nucleoside phosphate binding	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended

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Type	GO Term	Name	Evidence	Source
CC	GO:0000444	MIS12/MIND type complex	IEP	Enrichment
CC	GO:0000775	chromosome, centromeric region	IEP	Enrichment
CC	GO:0000776	kinetochore	IEP	Enrichment
CC	GO:0000786	nucleosome	IEP	Enrichment
CC	GO:0000796	condensin complex	IEP	Enrichment
CC	GO:0000818	nuclear MIS12/MIND complex	IEP	Enrichment
MF	GO:0003677	DNA binding	IEP	Enrichment
MF	GO:0003774	motor activity	IEP	Enrichment
MF	GO:0003777	microtubule motor activity	IEP	Enrichment
MF	GO:0003824	catalytic activity	IEP	Enrichment
MF	GO:0004100	chitin synthase activity	IEP	Enrichment
MF	GO:0004190	aspartic-type endopeptidase activity	IEP	Enrichment
MF	GO:0004222	metalloendopeptidase activity	IEP	Enrichment
MF	GO:0004672	protein kinase activity	IEP	Enrichment
BP	GO:0005975	carbohydrate metabolic process	IEP	Enrichment
BP	GO:0006022	aminoglycan metabolic process	IEP	Enrichment
BP	GO:0006023	aminoglycan biosynthetic process	IEP	Enrichment
BP	GO:0006030	chitin metabolic process	IEP	Enrichment
BP	GO:0006031	chitin biosynthetic process	IEP	Enrichment
BP	GO:0006040	amino sugar metabolic process	IEP	Enrichment
BP	GO:0006270	DNA replication initiation	IEP	Enrichment
BP	GO:0006323	DNA packaging	IEP	Enrichment
BP	GO:0006468	protein phosphorylation	IEP	Enrichment
BP	GO:0006520	cellular amino acid metabolic process	IEP	Enrichment
BP	GO:0006553	lysine metabolic process	IEP	Enrichment
BP	GO:0006793	phosphorus metabolic process	IEP	Enrichment
BP	GO:0006796	phosphate-containing compound metabolic process	IEP	Enrichment
BP	GO:0006928	movement of cell or subcellular component	IEP	Enrichment
BP	GO:0007017	microtubule-based process	IEP	Enrichment
BP	GO:0007018	microtubule-based movement	IEP	Enrichment
BP	GO:0007059	chromosome segregation	IEP	Enrichment
BP	GO:0007076	mitotic chromosome condensation	IEP	Enrichment
MF	GO:0008017	microtubule binding	IEP	Enrichment
MF	GO:0008080	N-acetyltransferase activity	IEP	Enrichment
MF	GO:0008092	cytoskeletal protein binding	IEP	Enrichment
MF	GO:0008131	primary amine oxidase activity	IEP	Enrichment
BP	GO:0008608	attachment of spindle microtubules to kinetochore	IEP	Enrichment
BP	GO:0008652	cellular amino acid biosynthetic process	IEP	Enrichment
MF	GO:0008837	diaminopimelate epimerase activity	IEP	Enrichment
MF	GO:0008942	nitrite reductase [NAD(P)H] activity	IEP	Enrichment
BP	GO:0009085	lysine biosynthetic process	IEP	Enrichment
BP	GO:0009089	lysine biosynthetic process via diaminopimelate	IEP	Enrichment
BP	GO:0009262	deoxyribonucleotide metabolic process	IEP	Enrichment
BP	GO:0009263	deoxyribonucleotide biosynthetic process	IEP	Enrichment
MF	GO:0015631	tubulin binding	IEP	Enrichment
MF	GO:0016407	acetyltransferase activity	IEP	Enrichment
MF	GO:0016410	N-acyltransferase activity	IEP	Enrichment
MF	GO:0016462	pyrophosphatase activity	IEP	Enrichment
MF	GO:0016641	oxidoreductase activity, acting on the CH-NH2 group of donors, oxygen as acceptor	IEP	Enrichment
MF	GO:0016661	oxidoreductase activity, acting on other nitrogenous compounds as donors	IEP	Enrichment
MF	GO:0016747	acyltransferase activity, transferring groups other than amino-acyl groups	IEP	Enrichment
MF	GO:0016787	hydrolase activity	IEP	Enrichment
MF	GO:0016810	hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds	IEP	Enrichment
MF	GO:0016817	hydrolase activity, acting on acid anhydrides	IEP	Enrichment
MF	GO:0016818	hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides	IEP	Enrichment
MF	GO:0016854	racemase and epimerase activity	IEP	Enrichment
MF	GO:0016855	racemase and epimerase activity, acting on amino acids and derivatives	IEP	Enrichment
MF	GO:0017111	nucleoside-triphosphatase activity	IEP	Enrichment
BP	GO:0022402	cell cycle process	IEP	Enrichment
BP	GO:0022414	reproductive process	IEP	Enrichment
MF	GO:0030246	carbohydrate binding	IEP	Enrichment
MF	GO:0030247	polysaccharide binding	IEP	Enrichment
BP	GO:0030261	chromosome condensation	IEP	Enrichment
CC	GO:0031262	Ndc80 complex	IEP	Enrichment
CC	GO:0032991	protein-containing complex	IEP	Enrichment
CC	GO:0032993	protein-DNA complex	IEP	Enrichment
MF	GO:0036361	racemase activity, acting on amino acids and derivatives	IEP	Enrichment
BP	GO:0043648	dicarboxylic acid metabolic process	IEP	Enrichment
CC	GO:0044815	DNA packaging complex	IEP	Enrichment
BP	GO:0045132	meiotic chromosome segregation	IEP	Enrichment
BP	GO:0046349	amino sugar biosynthetic process	IEP	Enrichment
BP	GO:0046451	diaminopimelate metabolic process	IEP	Enrichment
MF	GO:0046857	oxidoreductase activity, acting on other nitrogenous compounds as donors, with NAD or NADP as acceptor	IEP	Enrichment
MF	GO:0047661	amino-acid racemase activity	IEP	Enrichment
MF	GO:0048038	quinone binding	IEP	Enrichment
MF	GO:0051287	NAD binding	IEP	Enrichment
BP	GO:0051315	attachment of mitotic spindle microtubules to kinetochore	IEP	Enrichment
MF	GO:0070001	aspartic-type peptidase activity	IEP	Enrichment
CC	GO:0098687	chromosomal region	IEP	Enrichment
MF	GO:0098809	nitrite reductase activity	IEP	Enrichment
BP	GO:0098813	nuclear chromosome segregation	IEP	Enrichment
CC	GO:0099080	supramolecular complex	IEP	Enrichment
BP	GO:1901071	glucosamine-containing compound metabolic process	IEP	Enrichment
BP	GO:1901073	glucosamine-containing compound biosynthetic process	IEP	Enrichment
BP	GO:1903046	meiotic cell cycle process	IEP	Enrichment
BP	GO:1903047	mitotic cell cycle process	IEP	Enrichment
MF	GO:2001070	starch binding	IEP	Enrichment

InterPro domains	Description	Start	Stop
IPR003395	RecF/RecN/SMC_N	2	1158
IPR010935	SMC_hinge	516	635

External Links

No external refs found!

lcl|LHPG02000001.1_cds_PRW61562.1_554 (PRW61562)

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation