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  5. lcl|LHPG02000001.1_cds_PRW61399.1_401

lcl|LHPG02000001.1_cds_PRW61399.1_401 (PRW61399)


Aliases : PRW61399

Description : TRNA-dihydrouridine(47) synthase [NAD(P)(+)]-like


Gene families : OG_01_0001054 (OrthoFinder) Phylogenetic Tree(s): OG0001054_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: lcl|LHPG02000001.1_cds_PRW61399.1_401
Cluster HCCA: Cluster_25

Target Alias Description ECC score Gene Family Method Actions
Dusal.0020s00014.1 33193712 tRNA-dihydrouridine synthase [Interproscan]. 0.02 OrthoFinder
PTI_12G00560.1 No alias tRNA-dihydrouridine synthase [Interproscan]. 0.02 OrthoFinder
Transcript_contig_57299 57299 tRNA-dihydrouridine synthase [Interproscan]. 0.02 OrthoFinder
Vocar.0001s1778.1 32885246 E3 ligase, CCCH-type zinc finger; tRNA-dihydrouridine... 0.02 OrthoFinder
Vocar.0017s0070.1 32891389 tRNA-dihydrouridine synthase [Interproscan]. 0.03 OrthoFinder
XM_002502940.1 MICPUN_66278, 66278 tRNA-dihydrouridine synthase [Interproscan]. 0.02 OrthoFinder

Type GO Term Name Evidence Source
BP GO:0008033 tRNA processing IEA Interproscan
MF GO:0017150 tRNA dihydrouridine synthase activity IEA Interproscan
MF GO:0050660 flavin adenine dinucleotide binding IEA Interproscan
BP GO:0055114 obsolete oxidation-reduction process IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0000213 tRNA-intron endonuclease activity IEP Enrichment
BP GO:0000394 RNA splicing, via endonucleolytic cleavage and ligation IEP Enrichment
MF GO:0003916 DNA topoisomerase activity IEP Enrichment
MF GO:0003918 DNA topoisomerase type II (double strand cut, ATP-hydrolyzing) activity IEP Enrichment
MF GO:0004518 nuclease activity IEP Enrichment
MF GO:0004519 endonuclease activity IEP Enrichment
MF GO:0004521 endoribonuclease activity IEP Enrichment
MF GO:0004525 ribonuclease III activity IEP Enrichment
MF GO:0004540 ribonuclease activity IEP Enrichment
MF GO:0004549 tRNA-specific ribonuclease activity IEP Enrichment
MF GO:0005515 protein binding IEP Enrichment
BP GO:0006265 DNA topological change IEP Enrichment
BP GO:0006302 double-strand break repair IEP Enrichment
BP GO:0006388 tRNA splicing, via endonucleolytic cleavage and ligation IEP Enrichment
MF GO:0008094 ATPase, acting on DNA IEP Enrichment
MF GO:0015291 secondary active transmembrane transporter activity IEP Enrichment
MF GO:0015297 antiporter activity IEP Enrichment
MF GO:0016788 hydrolase activity, acting on ester bonds IEP Enrichment
MF GO:0016887 ATPase IEP Enrichment
MF GO:0016891 endoribonuclease activity, producing 5'-phosphomonoesters IEP Enrichment
MF GO:0016893 endonuclease activity, active with either ribo- or deoxyribonucleic acids and producing 5'-phosphomonoesters IEP Enrichment
MF GO:0030145 manganese ion binding IEP Enrichment
MF GO:0032296 double-stranded RNA-specific ribonuclease activity IEP Enrichment
MF GO:0042910 xenobiotic transmembrane transporter activity IEP Enrichment
BP GO:0071103 DNA conformation change IEP Enrichment
MF GO:0140097 catalytic activity, acting on DNA IEP Enrichment
InterPro domains Description Start Stop
IPR001269 DUS_fam 423 682
No external refs found!