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  5. Cre17.g725200

Cre17.g725200 (30782751)


Aliases : 30782751

Description : ABC transporter B family member 12 OS=Arabidopsis thaliana


Gene families : OG_01_0000036 (OrthoFinder) Phylogenetic Tree(s): OG0000036_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Cre17.g725200
Cluster HCCA: Cluster_52

Target Alias Description ECC score Gene Family Method Actions
Cpa|evm.model.tig00020952.7 tig00020952_g16473.t1 ABC transporter B family member 2 OS=Arabidopsis thaliana 0.02 OrthoFinder
EOD14122 No alias Putative ABC transporter [Ensembl]. 0.02 OrthoFinder
EOD31963 No alias Putative ABC transporter [Ensembl]. 0.02 OrthoFinder
Sro1567_g282990.1 Contig3738.g28665 Leptomycin B resistance protein pmd1 0.01 OrthoFinder
Sro157_g071300.1 Contig2362.g19420 Lactococcin transport/processing ATP-binding protein LcnC-like 0.02 OrthoFinder
TP12G00540.1 No alias ABC transporter-like; ABC transporter type 1,... 0.02 OrthoFinder

Type GO Term Name Evidence Source
MF GO:0005524 ATP binding IEA Interproscan
CC GO:0016021 integral component of membrane IEA Interproscan
MF GO:0016887 ATPase IEA Interproscan
MF GO:0042626 ATPase-coupled transmembrane transporter activity IEA Interproscan
BP GO:0055085 transmembrane transport IEA Interproscan
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Type GO Term Name Evidence Source
BP GO:0006352 DNA-templated transcription, initiation IEP Enrichment
MF GO:0017150 tRNA dihydrouridine synthase activity IEP Enrichment
InterPro domains Description Start Stop
IPR011527 ABC1_TM_dom 839 1112
IPR011527 ABC1_TM_dom 60 331
IPR003439 ABC_transporter-like_ATP-bd 1182 1330
IPR003439 ABC_transporter-like_ATP-bd 451 599
No external refs found!