Cre16.g687301 (30777125)

Aliases : 30777125

Description : RNA biosynthesis.RNA polymerase II-dependent transcription.pre-initiation complex.TATA box-binding protein (TBP) regulation.TBP-associated factor (MOT1)

Gene families : OG_01_0000017 (OrthoFinder) Phylogenetic Tree(s): OG0000017_tree

Sequence : coding (download), protein (download)

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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: Cre16.g687301
Cluster	HCCA: Cluster_161

Target	Alias	Description	ECC score	Gene Family Method
Cpa\|evm.model.tig00000128.11	tig00000128_g7211.t1	ISWI chromatin-remodeling complex ATPase CHR17...	0.02	OrthoFinder
Cpa\|evm.model.tig00020848.66	tig00020848_g14596.t1	Probable helicase CHR10 OS=Arabidopsis thaliana	0.02	OrthoFinder
Cz01g25030.t1	No alias	Helicase, C-terminal; Chromo domain; Domain of unknown...	0.02	OrthoFinder
Cz02g31160.t1	No alias	Helicase, C-terminal; SLIDE domain; SNF2-related,...	0.03	OrthoFinder
Cz19g07040.t1	No alias	Helicase, C-terminal; SNF2-related, N-terminal domain;...	0.03	OrthoFinder
Dusal.0024s00040.1	33202173	SNF2-related, N-terminal domain [Interproscan].	0.03	OrthoFinder
Dusal.0357s00004.1	33189829	SNF2-related, N-terminal domain; Helicase, C-terminal;...	0.02	OrthoFinder
Dusal.0752s00002.1	33199466	Domain of unknown function DUF3535; SNF2-related,...	0.03	OrthoFinder
OT_12G02840.1	No alias	Helicase, C-terminal; SNF2-related, N-terminal domain;...	0.02	OrthoFinder
Sro29_g019150.1	Contig1384.g12758	CHD3-type chromatin-remodeling factor CHR7	0.03	OrthoFinder
Sro358_g125960.1	Contig1210.g11383	Probable chromatin-remodeling complex ATPase chain	0.02	OrthoFinder
Sro463_g148220.1	Contig3968.g30431	Probable chromatin-remodeling complex ATPase chain	0.02	OrthoFinder
Transcript_contig_53936	53936	Helicase, C-terminal; SNF2-related, N-terminal domain;...	0.02	OrthoFinder
Vocar.0004s0442.1	32889776	Helicase, C-terminal; SNF2-related, N-terminal domain...	0.03	OrthoFinder
XM_002499830.1	MICPUN_56506, 56506	SNF2 super family	0.02	OrthoFinder
XM_002503134.1	MICPUN_59225, 59225	SNF2 super family	0.03	OrthoFinder
XM_002508085.1	MICPUN_60550, 60550	SNF2 super family	0.02	OrthoFinder
lcl\|BLLF01003728.1_cds_GFH28065.1_22542	HaLaN_26485, GFH28065	Helicase ATP-binding domain-containing protein	0.02	OrthoFinder
lcl\|VRMN01000003.1_cds_KAA8495718.1_1716	KAA8495718	Chromodomain-helicase-DNA-binding protein 2	0.03	OrthoFinder

Type	GO Term	Name	Evidence	Source
MF	GO:0000166	nucleotide binding	None	Extended
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0005488	binding	None	Extended
MF	GO:0005524	ATP binding	IEA	Interproscan
MF	GO:0017076	purine nucleotide binding	None	Extended
MF	GO:0030554	adenyl nucleotide binding	None	Extended
MF	GO:0032553	ribonucleotide binding	None	Extended
MF	GO:0032555	purine ribonucleotide binding	None	Extended
MF	GO:0032559	adenyl ribonucleotide binding	None	Extended
MF	GO:0035639	purine ribonucleoside triphosphate binding	None	Extended
MF	GO:0036094	small molecule binding	None	Extended
MF	GO:0043167	ion binding	None	Extended
MF	GO:0043168	anion binding	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
MF	GO:0097367	carbohydrate derivative binding	None	Extended
MF	GO:1901265	nucleoside phosphate binding	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended

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Type	GO Term	Name	Evidence	Source
BP	GO:0002097	tRNA wobble base modification	IEP	Enrichment
BP	GO:0002098	tRNA wobble uridine modification	IEP	Enrichment
MF	GO:0003676	nucleic acid binding	IEP	Enrichment
MF	GO:0003677	DNA binding	IEP	Enrichment
MF	GO:0003916	DNA topoisomerase activity	IEP	Enrichment
MF	GO:0003918	DNA topoisomerase type II (double strand cut, ATP-hydrolyzing) activity	IEP	Enrichment
MF	GO:0003989	acetyl-CoA carboxylase activity	IEP	Enrichment
BP	GO:0006139	nucleobase-containing compound metabolic process	IEP	Enrichment
BP	GO:0006265	DNA topological change	IEP	Enrichment
BP	GO:0006400	tRNA modification	IEP	Enrichment
BP	GO:0006631	fatty acid metabolic process	IEP	Enrichment
BP	GO:0006633	fatty acid biosynthetic process	IEP	Enrichment
BP	GO:0006725	cellular aromatic compound metabolic process	IEP	Enrichment
BP	GO:0009987	cellular process	IEP	Enrichment
MF	GO:0015298	solute:cation antiporter activity	IEP	Enrichment
MF	GO:0015299	solute:proton antiporter activity	IEP	Enrichment
BP	GO:0016070	RNA metabolic process	IEP	Enrichment
MF	GO:0016421	CoA carboxylase activity	IEP	Enrichment
MF	GO:0016885	ligase activity, forming carbon-carbon bonds	IEP	Enrichment
MF	GO:0022853	active ion transmembrane transporter activity	IEP	Enrichment
CC	GO:0033588	elongator holoenzyme complex	IEP	Enrichment
BP	GO:0034641	cellular nitrogen compound metabolic process	IEP	Enrichment
BP	GO:0046483	heterocycle metabolic process	IEP	Enrichment
BP	GO:0051276	chromosome organization	IEP	Enrichment
BP	GO:0071103	DNA conformation change	IEP	Enrichment
BP	GO:0072330	monocarboxylic acid biosynthetic process	IEP	Enrichment
BP	GO:0090304	nucleic acid metabolic process	IEP	Enrichment
CC	GO:0140535	intracellular protein-containing complex	IEP	Enrichment
BP	GO:1901360	organic cyclic compound metabolic process	IEP	Enrichment

InterPro domains	Description	Start	Stop
IPR001650	Helicase_C	1555	1654
IPR022707	Mot1_central_dom	654	906
IPR000330	SNF2_N	1112	1458
IPR000357	HEAT	1032	1059

External Links

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Cre16.g687301 (30777125)

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation