Cre16.g685200 (30778004)


Aliases : 30778004

No description available


Gene families : OG_01_0003158 (OrthoFinder) Phylogenetic Tree(s): OG0003158_tree

Sequence : coding (download), protein (download)


Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Cre16.g685200
Cluster HCCA: Cluster_15

Target Alias Description ECC score Gene Family Method Actions
Cpa|evm.model.tig00000893.5 tig00000893_g5348.t1 No description available 0.03 OrthoFinder
Cz03g11190.t1 No alias RNA recognition motif domain [Interproscan]. 0.18 OrthoFinder
Dusal.0244s00016.1 33186516 RNA recognition motif domain [Interproscan]. 0.04 OrthoFinder
EOD12070 No alias RNA recognition motif domain [Interproscan]. 0.11 OrthoFinder
OT_04G01770.1 No alias RNA recognition motif domain [Interproscan]. 0.03 OrthoFinder
PTI_10G00250.1 No alias RNA recognition motif domain [Interproscan]. 0.14 OrthoFinder
Sro737_g195080.1 Contig1367.g12567 Multiple RNA-binding domain-containing protein 1 0.11 OrthoFinder
TP04G04110.1 No alias RNA recognition motif domain [Interproscan]. 0.05 OrthoFinder
Vocar.0042s0105.1 32892088 RNA recognition motif domain [Interproscan]. 0.04 OrthoFinder
XM_002501431.1 MICPUN_81062, 81062 RNA recognition motif domain [Interproscan]. 0.14 OrthoFinder
XM_003057974.1 MicpuC2_16164, 16164 RNA recognition motif domain [Interproscan]. 0.06 OrthoFinder
lcl|BLLF01000341.1_cds_GFH10734.1_5211 HaLaN_06100, GFH10734 Hypothetical protein 0.01 OrthoFinder
lcl|BLLF01001092.1_cds_GFH17076.1_11553 HaLaN_13623, GFH17076 RRM domain-containing protein 0.02 OrthoFinder
lcl|LHPG02000005.1_cds_PRW58148.1_7665 PRW58148 Multiple RNA-binding domain-containing 1 0.14 OrthoFinder
lcl|VRMN01000003.1_cds_KAA8495392.1_1390 KAA8495392 Multiple RNA-binding domain-containing protein 1 0.04 OrthoFinder

Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEA Interproscan
Type GO Term Name Evidence Source
BP GO:0000154 rRNA modification IEP Enrichment
BP GO:0000462 maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) IEP Enrichment
BP GO:0001510 RNA methylation IEP Enrichment
MF GO:0003724 RNA helicase activity IEP Enrichment
CC GO:0005634 nucleus IEP Enrichment
CC GO:0005730 nucleolus IEP Enrichment
CC GO:0005732 sno(s)RNA-containing ribonucleoprotein complex IEP Enrichment
BP GO:0006139 nucleobase-containing compound metabolic process IEP Enrichment
BP GO:0006364 rRNA processing IEP Enrichment
BP GO:0006396 RNA processing IEP Enrichment
BP GO:0006725 cellular aromatic compound metabolic process IEP Enrichment
BP GO:0006807 nitrogen compound metabolic process IEP Enrichment
BP GO:0008152 metabolic process IEP Enrichment
MF GO:0008168 methyltransferase activity IEP Enrichment
MF GO:0008173 RNA methyltransferase activity IEP Enrichment
MF GO:0008649 rRNA methyltransferase activity IEP Enrichment
MF GO:0008757 S-adenosylmethionine-dependent methyltransferase activity IEP Enrichment
BP GO:0016070 RNA metabolic process IEP Enrichment
BP GO:0016072 rRNA metabolic process IEP Enrichment
MF GO:0016435 rRNA (guanine) methyltransferase activity IEP Enrichment
MF GO:0016741 transferase activity, transferring one-carbon groups IEP Enrichment
MF GO:0017150 tRNA dihydrouridine synthase activity IEP Enrichment
BP GO:0030490 maturation of SSU-rRNA IEP Enrichment
CC GO:0030684 preribosome IEP Enrichment
BP GO:0031167 rRNA methylation IEP Enrichment
CC GO:0032040 small-subunit processome IEP Enrichment
BP GO:0032259 methylation IEP Enrichment
BP GO:0034470 ncRNA processing IEP Enrichment
BP GO:0034641 cellular nitrogen compound metabolic process IEP Enrichment
BP GO:0034660 ncRNA metabolic process IEP Enrichment
BP GO:0036265 RNA (guanine-N7)-methylation IEP Enrichment
BP GO:0043170 macromolecule metabolic process IEP Enrichment
CC GO:0043226 organelle IEP Enrichment
CC GO:0043227 membrane-bounded organelle IEP Enrichment
CC GO:0043229 intracellular organelle IEP Enrichment
CC GO:0043231 intracellular membrane-bounded organelle IEP Enrichment
BP GO:0043414 macromolecule methylation IEP Enrichment
BP GO:0044237 cellular metabolic process IEP Enrichment
BP GO:0044238 primary metabolic process IEP Enrichment
BP GO:0046483 heterocycle metabolic process IEP Enrichment
BP GO:0070475 rRNA base methylation IEP Enrichment
BP GO:0070476 rRNA (guanine-N7)-methylation IEP Enrichment
BP GO:0071704 organic substance metabolic process IEP Enrichment
BP GO:0090304 nucleic acid metabolic process IEP Enrichment
MF GO:0140098 catalytic activity, acting on RNA IEP Enrichment
MF GO:0140102 catalytic activity, acting on a rRNA IEP Enrichment
BP GO:1901360 organic cyclic compound metabolic process IEP Enrichment
CC GO:1990904 ribonucleoprotein complex IEP Enrichment
InterPro domains Description Start Stop
IPR000504 RRM_dom 947 1015
IPR000504 RRM_dom 459 539
IPR000504 RRM_dom 695 754
IPR000504 RRM_dom 17 81
IPR000504 RRM_dom 839 916
No external refs found!