Cre16.g680900 (30777306, RPB1)

Aliases : 30777306, RPB1

Description : RNA biosynthesis.DNA-dependent RNA polymerase (Pol) complexes.Pol II catalytic subunits.subunit 1

Gene families : OG_01_0000697 (OrthoFinder) Phylogenetic Tree(s): OG0000697_tree

Sequence : coding (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: Cre16.g680900
Cluster	HCCA: Cluster_110

Target	Alias	Description	ECC score	Gene Family Method
Cpa\|evm.model.tig00000241.15	tig00000241_g20874.t1	RNA biosynthesis.DNA-dependent RNA polymerase (Pol)...	0.02	OrthoFinder
Cz03g13040.t1	No alias	RNA polymerase II, heptapeptide repeat, eukaryotic; RNA...	0.04	OrthoFinder
Dusal.0157s00011.1	33200035	RNA polymerase Rpb1, domain 1; RNA polymerase, alpha...	0.03	OrthoFinder
Dusal.0157s00013.1	33200051	RNA polymerase Rpb1, domain 5; RNA polymerase Rpb1,...	0.02	OrthoFinder
EOD16753	No alias	RNA polymerase Rpb1, domain 4; RNA polymerase Rpb1,...	0.01	OrthoFinder
EOD16843	No alias	RNA polymerase Rpb1, domain 4; RNA polymerase Rpb1,...	0.03	OrthoFinder
PTI_12G01840.1	No alias	RNA polymerase Rpb1, domain 3; RNA polymerase Rpb1,...	0.01	OrthoFinder
XM_002503483.1	MICPUN_94662, 94662	RNA polymerase Rpb1, domain 6; RNA polymerase Rpb1,...	0.01	OrthoFinder
XM_003055558.1	MicpuC2_45178, 45178	RNA polymerase Rpb1, domain 3; RNA polymerase Rpb1,...	0.02	OrthoFinder
lcl\|LHPG02000005.1_cds_PRW58100.1_7994	PRW58100	DNA-directed RNA polymerase III largest subunit	0.02	OrthoFinder
lcl\|LHPG02000007.1_cds_PRW57000.1_9043	PRW57000	DNA-directed RNA polymerase II subunit 1	0.04	OrthoFinder
lcl\|VRMN01000018.1_cds_KAA8490883.1_5655	KAA8490883	DNA-directed RNA polymerase II subunit 1	0.01	OrthoFinder

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003676	nucleic acid binding	None	Extended
MF	GO:0003677	DNA binding	IEA	Interproscan
MF	GO:0003824	catalytic activity	None	Extended
MF	GO:0003899	DNA-directed 5'-3' RNA polymerase activity	IEA	Interproscan
MF	GO:0005488	binding	None	Extended
BP	GO:0006139	nucleobase-containing compound metabolic process	None	Extended
BP	GO:0006351	transcription, DNA-templated	IEA	Interproscan
BP	GO:0006366	transcription by RNA polymerase II	IEA	Interproscan
BP	GO:0006725	cellular aromatic compound metabolic process	None	Extended
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
BP	GO:0009058	biosynthetic process	None	Extended
BP	GO:0009059	macromolecule biosynthetic process	None	Extended
BP	GO:0009987	cellular process	None	Extended
BP	GO:0016070	RNA metabolic process	None	Extended
MF	GO:0016740	transferase activity	None	Extended
MF	GO:0016772	transferase activity, transferring phosphorus-containing groups	None	Extended
MF	GO:0016779	nucleotidyltransferase activity	None	Extended
BP	GO:0018130	heterocycle biosynthetic process	None	Extended
BP	GO:0019438	aromatic compound biosynthetic process	None	Extended
BP	GO:0032774	RNA biosynthetic process	None	Extended
MF	GO:0034062	5'-3' RNA polymerase activity	None	Extended
BP	GO:0034641	cellular nitrogen compound metabolic process	None	Extended
BP	GO:0034645	cellular macromolecule biosynthetic process	None	Extended
BP	GO:0034654	nucleobase-containing compound biosynthetic process	None	Extended
BP	GO:0043170	macromolecule metabolic process	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0044249	cellular biosynthetic process	None	Extended
BP	GO:0044260	cellular macromolecule metabolic process	None	Extended
BP	GO:0044271	cellular nitrogen compound biosynthetic process	None	Extended
BP	GO:0046483	heterocycle metabolic process	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
BP	GO:0090304	nucleic acid metabolic process	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
BP	GO:0097659	nucleic acid-templated transcription	None	Extended
MF	GO:0097747	RNA polymerase activity	None	Extended
MF	GO:0140098	catalytic activity, acting on RNA	None	Extended
BP	GO:1901360	organic cyclic compound metabolic process	None	Extended
BP	GO:1901362	organic cyclic compound biosynthetic process	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended
BP	GO:1901576	organic substance biosynthetic process	None	Extended

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Type	GO Term	Name	Evidence	Source
MF	GO:0000166	nucleotide binding	IEP	Enrichment
MF	GO:0003779	actin binding	IEP	Enrichment
MF	GO:0004190	aspartic-type endopeptidase activity	IEP	Enrichment
MF	GO:0005524	ATP binding	IEP	Enrichment
BP	GO:0006352	DNA-templated transcription, initiation	IEP	Enrichment
BP	GO:0006633	fatty acid biosynthetic process	IEP	Enrichment
BP	GO:0006886	intracellular protein transport	IEP	Enrichment
BP	GO:0006904	vesicle docking involved in exocytosis	IEP	Enrichment
MF	GO:0008092	cytoskeletal protein binding	IEP	Enrichment
BP	GO:0008104	protein localization	IEP	Enrichment
BP	GO:0015031	protein transport	IEP	Enrichment
BP	GO:0016192	vesicle-mediated transport	IEP	Enrichment
BP	GO:0016485	protein processing	IEP	Enrichment
BP	GO:0016567	protein ubiquitination	IEP	Enrichment
MF	GO:0016887	ATPase	IEP	Enrichment
MF	GO:0017076	purine nucleotide binding	IEP	Enrichment
BP	GO:0022406	membrane docking	IEP	Enrichment
CC	GO:0030117	membrane coat	IEP	Enrichment
CC	GO:0030118	clathrin coat	IEP	Enrichment
CC	GO:0030120	vesicle coat	IEP	Enrichment
CC	GO:0030125	clathrin vesicle coat	IEP	Enrichment
CC	GO:0030130	clathrin coat of trans-Golgi network vesicle	IEP	Enrichment
MF	GO:0030554	adenyl nucleotide binding	IEP	Enrichment
BP	GO:0032446	protein modification by small protein conjugation	IEP	Enrichment
MF	GO:0032553	ribonucleotide binding	IEP	Enrichment
MF	GO:0032555	purine ribonucleotide binding	IEP	Enrichment
MF	GO:0032559	adenyl ribonucleotide binding	IEP	Enrichment
BP	GO:0033036	macromolecule localization	IEP	Enrichment
MF	GO:0035639	purine ribonucleoside triphosphate binding	IEP	Enrichment
MF	GO:0036094	small molecule binding	IEP	Enrichment
MF	GO:0043167	ion binding	IEP	Enrichment
MF	GO:0043168	anion binding	IEP	Enrichment
BP	GO:0045184	establishment of protein localization	IEP	Enrichment
BP	GO:0046907	intracellular transport	IEP	Enrichment
BP	GO:0048278	vesicle docking	IEP	Enrichment
BP	GO:0051179	localization	IEP	Enrichment
BP	GO:0051604	protein maturation	IEP	Enrichment
BP	GO:0051640	organelle localization	IEP	Enrichment
BP	GO:0051641	cellular localization	IEP	Enrichment
BP	GO:0051649	establishment of localization in cell	IEP	Enrichment
MF	GO:0070001	aspartic-type peptidase activity	IEP	Enrichment
BP	GO:0071702	organic substance transport	IEP	Enrichment
BP	GO:0071705	nitrogen compound transport	IEP	Enrichment
BP	GO:0072330	monocarboxylic acid biosynthetic process	IEP	Enrichment
MF	GO:0097367	carbohydrate derivative binding	IEP	Enrichment
CC	GO:0098796	membrane protein complex	IEP	Enrichment
BP	GO:0140029	exocytic process	IEP	Enrichment
BP	GO:0140056	organelle localization by membrane tethering	IEP	Enrichment
MF	GO:1901265	nucleoside phosphate binding	IEP	Enrichment

InterPro domains	Description	Start	Stop
IPR007073	RNA_pol_Rpb1_7	1138	1265
IPR007083	RNA_pol_Rpb1_4	690	795
IPR007075	RNA_pol_Rpb1_6	868	1051
IPR000684	RNA_pol_II_repeat_euk	1630	1643
IPR000684	RNA_pol_II_repeat_euk	1707	1720
IPR000684	RNA_pol_II_repeat_euk	1616	1629
IPR000684	RNA_pol_II_repeat_euk	1526	1538
IPR000684	RNA_pol_II_repeat_euk	1539	1552
IPR000684	RNA_pol_II_repeat_euk	1567	1580
IPR000684	RNA_pol_II_repeat_euk	1686	1699
IPR000684	RNA_pol_II_repeat_euk	1637	1650
IPR000684	RNA_pol_II_repeat_euk	1581	1594
IPR000684	RNA_pol_II_repeat_euk	1651	1664
IPR000684	RNA_pol_II_repeat_euk	1595	1608
IPR000684	RNA_pol_II_repeat_euk	1609	1622
IPR000684	RNA_pol_II_repeat_euk	1602	1615
IPR000684	RNA_pol_II_repeat_euk	1700	1713
IPR000684	RNA_pol_II_repeat_euk	1560	1573
IPR000684	RNA_pol_II_repeat_euk	1672	1685
IPR000684	RNA_pol_II_repeat_euk	1588	1601
IPR000684	RNA_pol_II_repeat_euk	1658	1671
IPR000684	RNA_pol_II_repeat_euk	1644	1657
IPR000684	RNA_pol_II_repeat_euk	1574	1587
IPR000684	RNA_pol_II_repeat_euk	1553	1566
IPR000684	RNA_pol_II_repeat_euk	1623	1636
IPR000722	RNA_pol_asu	330	498
IPR007080	RNA_pol_Rpb1_1	15	328
IPR007081	RNA_pol_Rpb1_5	802	1396
IPR007066	RNA_pol_Rpb1_3	501	664

External Links

No external refs found!

Cre16.g680900 (30777306, RPB1)

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation