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  5. Cre16.g679900

Cre16.g679900 (30777977, XRN3)


Aliases : 30777977, XRN3

Description : 5-3 exoribonuclease 3 OS=Arabidopsis thaliana


Gene families : OG_01_0000264 (OrthoFinder) Phylogenetic Tree(s): OG0000264_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Cre16.g679900
Cluster HCCA: Cluster_132

Target Alias Description ECC score Gene Family Method Actions
Cpa|evm.model.tig00000241.175 tig00000241_g21046.t1 5-3 exoribonuclease 3 OS=Arabidopsis thaliana 0.02 OrthoFinder
Cpa|evm.model.tig00001164.8 tig00001164_g7398.t1 5-3 exoribonuclease 2 OS=Arabidopsis thaliana 0.01 OrthoFinder
Cz03g05220.t1 No alias Putative 5-3 exonuclease; Xrn1, helical domain [Interproscan]. 0.05 OrthoFinder
Cz15g12010.t1 No alias Putative 5-3 exonuclease; 5'-3' exoribonuclease 1,... 0.03 OrthoFinder
Dusal.0001s00024.1 33198788 Putative 5-3 exonuclease; Xrn1, helical domain [Interproscan]. 0.03 OrthoFinder
EOD36897 No alias Putative 5-3 exonuclease [Interproscan]. 0.02 OrthoFinder
OT_06G03940.1 No alias Putative 5-3 exonuclease; Xrn1, helical domain [Interproscan]. 0.02 OrthoFinder
PTI_01G08170.1 No alias 5'-3' exoribonuclease 1, SH3-like domain; Xrn1, helical... 0.04 OrthoFinder
PTI_16G00600.1 No alias Putative 5-3 exonuclease; Xrn1, helical domain [Interproscan]. 0.03 OrthoFinder
PTI_18G00430.1 No alias Putative 5-3 exonuclease; Xrn1, helical domain;... 0.01 OrthoFinder
Sro662_g183380.1 Contig3613.g27932 5'-3' exoribonuclease 0.02 OrthoFinder
Vocar.0018s0127.1 32898571 Putative 5-3 exonuclease; Xrn1, helical domain [Interproscan]. 0.02 OrthoFinder
XM_002499994.1 MICPUN_98971, 98971 Putative 5-3 exonuclease [Interproscan]. 0.02 OrthoFinder
XM_003057839.1 MicpuC2_39493, 39493 Putative 5-3 exonuclease [Interproscan]. 0.02 OrthoFinder
lcl|BLLF01001750.1_cds_GFH21041.1_15518 HaLaN_18267, GFH21041 5'-3' exoribonuclease 1 0.01 OrthoFinder
lcl|LHPG02000004.1_cds_PRW59001.1_7182 PRW59001 5-3 exoribonuclease 1 0.02 OrthoFinder
lcl|LHPG02000007.1_cds_PRW57491.1_8980 PRW57491 5-3 exoribonuclease 2 0.04 OrthoFinder
lcl|VRMN01000001.1_cds_KAA8499911.1_8864 KAA8499911 5'-3' exoribonuclease 2 0.02 OrthoFinder
lcl|VRMN01000004.1_cds_KAA8494597.1_3127 KAA8494597 5'-3' exoribonuclease 2-like 0.01 OrthoFinder

Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0003677 DNA binding IEP Enrichment
MF GO:0003755 peptidyl-prolyl cis-trans isomerase activity IEP Enrichment
MF GO:0003899 DNA-directed 5'-3' RNA polymerase activity IEP Enrichment
MF GO:0003916 DNA topoisomerase activity IEP Enrichment
MF GO:0003918 DNA topoisomerase type II (double strand cut, ATP-hydrolyzing) activity IEP Enrichment
MF GO:0005515 protein binding IEP Enrichment
BP GO:0006139 nucleobase-containing compound metabolic process IEP Enrichment
BP GO:0006265 DNA topological change IEP Enrichment
BP GO:0006351 transcription, DNA-templated IEP Enrichment
BP GO:0006396 RNA processing IEP Enrichment
BP GO:0006397 mRNA processing IEP Enrichment
BP GO:0006399 tRNA metabolic process IEP Enrichment
BP GO:0006400 tRNA modification IEP Enrichment
BP GO:0006725 cellular aromatic compound metabolic process IEP Enrichment
BP GO:0006807 nitrogen compound metabolic process IEP Enrichment
BP GO:0008033 tRNA processing IEP Enrichment
BP GO:0008150 biological_process IEP Enrichment
BP GO:0008152 metabolic process IEP Enrichment
BP GO:0009059 macromolecule biosynthetic process IEP Enrichment
BP GO:0009451 RNA modification IEP Enrichment
BP GO:0009987 cellular process IEP Enrichment
BP GO:0016070 RNA metabolic process IEP Enrichment
MF GO:0016779 nucleotidyltransferase activity IEP Enrichment
MF GO:0016853 isomerase activity IEP Enrichment
MF GO:0016859 cis-trans isomerase activity IEP Enrichment
BP GO:0032774 RNA biosynthetic process IEP Enrichment
MF GO:0034062 5'-3' RNA polymerase activity IEP Enrichment
BP GO:0034470 ncRNA processing IEP Enrichment
BP GO:0034641 cellular nitrogen compound metabolic process IEP Enrichment
BP GO:0034645 cellular macromolecule biosynthetic process IEP Enrichment
BP GO:0034660 ncRNA metabolic process IEP Enrichment
BP GO:0043170 macromolecule metabolic process IEP Enrichment
BP GO:0043412 macromolecule modification IEP Enrichment
BP GO:0044237 cellular metabolic process IEP Enrichment
BP GO:0044238 primary metabolic process IEP Enrichment
BP GO:0044260 cellular macromolecule metabolic process IEP Enrichment
BP GO:0046483 heterocycle metabolic process IEP Enrichment
BP GO:0071103 DNA conformation change IEP Enrichment
BP GO:0071704 organic substance metabolic process IEP Enrichment
BP GO:0090304 nucleic acid metabolic process IEP Enrichment
BP GO:0097659 nucleic acid-templated transcription IEP Enrichment
MF GO:0097747 RNA polymerase activity IEP Enrichment
MF GO:0140098 catalytic activity, acting on RNA IEP Enrichment
BP GO:1901360 organic cyclic compound metabolic process IEP Enrichment
InterPro domains Description Start Stop
IPR004859 Put_53exo 1 253
IPR041412 Xrn1_helical 647 979
IPR041412 Xrn1_helical 328 480
No external refs found!