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  5. Cre13.g603900

Cre13.g603900 (30783937)


Aliases : 30783937

Description : Protein biosynthesis.aminoacyl-tRNA synthetase activities.phenylalanine-tRNA ligase complex.beta subunit


Gene families : OG_01_0003521 (OrthoFinder) Phylogenetic Tree(s): OG0003521_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Cre13.g603900
Cluster HCCA: Cluster_68

Target Alias Description ECC score Gene Family Method Actions
Cpa|evm.model.tig00021464.35 tig00021464_g21740.t1 Protein biosynthesis.aminoacyl-tRNA synthetase... 0.05 OrthoFinder
Cz05g10270.t1 No alias tRNA synthetase, B5-domain; Phenylalanine--tRNA ligase... 0.06 OrthoFinder
EOD34025 No alias Phenylalanyl tRNA synthetase beta chain, core domain;... 0.01 OrthoFinder
OT_18G00500.1 No alias Phenylalanyl tRNA synthetase beta chain, core domain;... 0.05 OrthoFinder
Sro299_g111380.1 Contig1218.g11440 Phenylalanine--tRNA ligase beta subunit 0.12 OrthoFinder
TP03G06810.1 No alias tRNA synthetase, B5-domain; Phenylalanine--tRNA ligase... 0.02 OrthoFinder
Transcript_contig_80536 80536 B3/B4 tRNA-binding domain; Phenylalanine--tRNA ligase... 0.01 OrthoFinder
Vocar.0065s0014.1 32886831 Phenylalanyl tRNA synthetase beta chain, core domain;... 0.06 OrthoFinder
XM_002501071.1 MICPUN_57307, 57307 Phenylalanine--tRNA ligase beta subunit, B1 domain;... 0.07 OrthoFinder
XM_003064483.1 MicpuC2_45062, 45062 Phenylalanyl tRNA synthetase beta chain, core domain;... 0.06 OrthoFinder
lcl|LHPG02000014.1_cds_PRW39230.1_2539 PRW39230 Putative phenylalanine-tRNA ligase beta subunit 0.12 OrthoFinder
lcl|VRMN01000006.1_cds_KAA8493836.1_4598 KAA8493836 Phenylalanine--tRNA ligase beta subunit, cytoplasmic 0.06 OrthoFinder

Type GO Term Name Evidence Source
MF GO:0000287 magnesium ion binding IEA Interproscan
MF GO:0003723 RNA binding IEA Interproscan
MF GO:0005524 ATP binding IEA Interproscan
BP GO:0006432 phenylalanyl-tRNA aminoacylation IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0000049 tRNA binding IEP Enrichment
BP GO:0000096 sulfur amino acid metabolic process IEP Enrichment
MF GO:0003743 translation initiation factor activity IEP Enrichment
MF GO:0003824 catalytic activity IEP Enrichment
MF GO:0003855 3-dehydroquinate dehydratase activity IEP Enrichment
MF GO:0003924 GTPase activity IEP Enrichment
MF GO:0004107 chorismate synthase activity IEP Enrichment
MF GO:0004489 methylenetetrahydrofolate reductase (NAD(P)H) activity IEP Enrichment
MF GO:0004764 shikimate 3-dehydrogenase (NADP+) activity IEP Enrichment
MF GO:0004812 aminoacyl-tRNA ligase activity IEP Enrichment
MF GO:0004814 arginine-tRNA ligase activity IEP Enrichment
CC GO:0005737 cytoplasm IEP Enrichment
CC GO:0005741 mitochondrial outer membrane IEP Enrichment
CC GO:0005852 eukaryotic translation initiation factor 3 complex IEP Enrichment
BP GO:0006413 translational initiation IEP Enrichment
BP GO:0006420 arginyl-tRNA aminoacylation IEP Enrichment
BP GO:0006534 cysteine metabolic process IEP Enrichment
BP GO:0006553 lysine metabolic process IEP Enrichment
BP GO:0006555 methionine metabolic process IEP Enrichment
BP GO:0006790 sulfur compound metabolic process IEP Enrichment
MF GO:0008135 translation factor activity, RNA binding IEP Enrichment
MF GO:0008839 4-hydroxy-tetrahydrodipicolinate reductase IEP Enrichment
BP GO:0009066 aspartate family amino acid metabolic process IEP Enrichment
BP GO:0009067 aspartate family amino acid biosynthetic process IEP Enrichment
BP GO:0009069 serine family amino acid metabolic process IEP Enrichment
BP GO:0009085 lysine biosynthetic process IEP Enrichment
BP GO:0009089 lysine biosynthetic process via diaminopimelate IEP Enrichment
BP GO:0009092 homoserine metabolic process IEP Enrichment
MF GO:0016628 oxidoreductase activity, acting on the CH-CH group of donors, NAD or NADP as acceptor IEP Enrichment
MF GO:0016645 oxidoreductase activity, acting on the CH-NH group of donors IEP Enrichment
MF GO:0016646 oxidoreductase activity, acting on the CH-NH group of donors, NAD or NADP as acceptor IEP Enrichment
MF GO:0016829 lyase activity IEP Enrichment
MF GO:0016835 carbon-oxygen lyase activity IEP Enrichment
MF GO:0016838 carbon-oxygen lyase activity, acting on phosphates IEP Enrichment
MF GO:0016874 ligase activity IEP Enrichment
MF GO:0016875 ligase activity, forming carbon-oxygen bonds IEP Enrichment
BP GO:0019346 transsulfuration IEP Enrichment
CC GO:0019867 outer membrane IEP Enrichment
CC GO:0031966 mitochondrial membrane IEP Enrichment
CC GO:0031968 organelle outer membrane IEP Enrichment
BP GO:0043648 dicarboxylic acid metabolic process IEP Enrichment
MF GO:0045182 translation regulator activity IEP Enrichment
BP GO:0046451 diaminopimelate metabolic process IEP Enrichment
BP GO:0050667 homocysteine metabolic process IEP Enrichment
MF GO:0090079 translation regulator activity, nucleic acid binding IEP Enrichment
CC GO:0098588 bounding membrane of organelle IEP Enrichment
MF GO:0140098 catalytic activity, acting on RNA IEP Enrichment
MF GO:0140101 catalytic activity, acting on a tRNA IEP Enrichment
BP GO:1901605 alpha-amino acid metabolic process IEP Enrichment
BP GO:1901607 alpha-amino acid biosynthetic process IEP Enrichment
InterPro domains Description Start Stop
IPR040659 PhetRS_B1 1 100
IPR041616 PheRS_beta_core 390 607
IPR005147 tRNA_synthase_B5-dom 322 387
IPR005146 B3/B4_tRNA-bd 130 291
No external refs found!