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  5. Cpa|evm.model.tig00000448.26

Cpa|evm.model.tig00000448.26 (tig00000448_g858.t1)


Aliases : tig00000448_g858.t1

Description : RNA biosynthesis.transcriptional activation.MYB superfamily.MYB transcription factor


Gene families : OG_01_0000018 (OrthoFinder) Phylogenetic Tree(s): OG0000018_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Cpa|evm.model.tig00000448.26
Cluster HCCA: Cluster_190

Target Alias Description ECC score Gene Family Method Actions
Cre16.g677382 30777694 RNA biosynthesis.transcriptional activation.MYB... 0.02 OrthoFinder
Transcript_contig_78900 78900 SANT/Myb domain [Interproscan]. 0.01 OrthoFinder
lcl|VRMN01000001.1_cds_KAA8498941.1_7894 KAA8498941 Transcriptional activator Myb 0.01 OrthoFinder
lcl|VRMN01000003.1_cds_KAA8495402.1_1400 KAA8495402 Transcription factor MYB44 0.02 OrthoFinder
lcl|VRMN01000004.1_cds_KAA8494854.1_3384 KAA8494854 Transcription factor 0.02 OrthoFinder
lcl|VRMN01000010.1_cds_KAA8492231.1_5414 KAA8492231 Myb-like protein L 0.01 OrthoFinder

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0004197 cysteine-type endopeptidase activity IEP Enrichment
MF GO:0005215 transporter activity IEP Enrichment
MF GO:0005216 ion channel activity IEP Enrichment
CC GO:0005575 cellular_component IEP Enrichment
CC GO:0005891 voltage-gated calcium channel complex IEP Enrichment
BP GO:0006355 regulation of transcription, DNA-templated IEP Enrichment
BP GO:0009187 cyclic nucleotide metabolic process IEP Enrichment
BP GO:0009190 cyclic nucleotide biosynthetic process IEP Enrichment
BP GO:0009889 regulation of biosynthetic process IEP Enrichment
BP GO:0010468 regulation of gene expression IEP Enrichment
BP GO:0010556 regulation of macromolecule biosynthetic process IEP Enrichment
MF GO:0015267 channel activity IEP Enrichment
CC GO:0016020 membrane IEP Enrichment
CC GO:0016459 myosin complex IEP Enrichment
MF GO:0016787 hydrolase activity IEP Enrichment
BP GO:0018298 protein-chromophore linkage IEP Enrichment
BP GO:0019219 regulation of nucleobase-containing compound metabolic process IEP Enrichment
BP GO:0019222 regulation of metabolic process IEP Enrichment
MF GO:0022803 passive transmembrane transporter activity IEP Enrichment
MF GO:0022857 transmembrane transporter activity IEP Enrichment
BP GO:0031323 regulation of cellular metabolic process IEP Enrichment
BP GO:0031326 regulation of cellular biosynthetic process IEP Enrichment
CC GO:0034702 ion channel complex IEP Enrichment
CC GO:0034703 cation channel complex IEP Enrichment
CC GO:0034704 calcium channel complex IEP Enrichment
CC GO:0036128 CatSper complex IEP Enrichment
BP GO:0050789 regulation of biological process IEP Enrichment
BP GO:0050794 regulation of cellular process IEP Enrichment
BP GO:0051171 regulation of nitrogen compound metabolic process IEP Enrichment
BP GO:0051252 regulation of RNA metabolic process IEP Enrichment
BP GO:0060255 regulation of macromolecule metabolic process IEP Enrichment
BP GO:0065007 biological regulation IEP Enrichment
BP GO:0080090 regulation of primary metabolic process IEP Enrichment
CC GO:0098797 plasma membrane protein complex IEP Enrichment
CC GO:0110165 cellular anatomical entity IEP Enrichment
CC GO:1902495 transmembrane transporter complex IEP Enrichment
BP GO:1903506 regulation of nucleic acid-templated transcription IEP Enrichment
CC GO:1990351 transporter complex IEP Enrichment
BP GO:2000112 regulation of cellular macromolecule biosynthetic process IEP Enrichment
BP GO:2001141 regulation of RNA biosynthetic process IEP Enrichment
InterPro domains Description Start Stop
IPR001005 SANT/Myb 174 220
IPR001005 SANT/Myb 227 266
No external refs found!