Cre12.g543100 (30792753)

Aliases : 30792753

Description : RNA processing.RNA modification.rRNA/tRNA methylation.TRM61-TRM6 tRNA adenosine-methyltransferase complex.TRM6 component

Gene families : OG_01_0004180 (OrthoFinder) Phylogenetic Tree(s): OG0004180_tree

Sequence : coding (download), protein (download)

Download

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: Cre12.g543100
Cluster	HCCA: Cluster_18

Target	Alias	Description	ECC score	Gene Family Method
Cpa\|evm.model.tig00001107.1	tig00001107_g7088.t1	RNA processing.RNA modification.rRNA/tRNA...	0.02	OrthoFinder
Cz07g21060.t1	No alias	tRNA (adenine(58)-N(1))-methyltransferase non-catalytic...	0.02	OrthoFinder
EOD37366	No alias	tRNA (adenine(58)-N(1))-methyltransferase non-catalytic...	0.06	OrthoFinder
OT_05G03670.1	No alias	tRNA (adenine(58)-N(1))-methyltransferase non-catalytic...	0.11	OrthoFinder
PTI_28G00370.1	No alias	tRNA (adenine(58)-N(1))-methyltransferase non-catalytic...	0.05	OrthoFinder
Vocar.0007s0085.1	32887902	tRNA (adenine(58)-N(1))-methyltransferase non-catalytic...	0.03	OrthoFinder
XM_002506620.1	MICPUN_104523, 104523	tRNA (adenine(58)-N(1))-methyltransferase non-catalytic...	0.13	OrthoFinder
XM_003061271.1	MicpuC2_60934, 60934	tRNA (adenine(58)-N(1))-methyltransferase non-catalytic...	0.06	OrthoFinder

Type	GO Term	Name	Evidence	Source
BP	GO:0001510	RNA methylation	None	Extended
BP	GO:0006139	nucleobase-containing compound metabolic process	None	Extended
BP	GO:0006396	RNA processing	None	Extended
BP	GO:0006399	tRNA metabolic process	None	Extended
BP	GO:0006400	tRNA modification	None	Extended
BP	GO:0006725	cellular aromatic compound metabolic process	None	Extended
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0008033	tRNA processing	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
BP	GO:0009451	RNA modification	None	Extended
BP	GO:0009987	cellular process	None	Extended
BP	GO:0016070	RNA metabolic process	None	Extended
BP	GO:0030488	tRNA methylation	IEA	Interproscan
BP	GO:0032259	methylation	None	Extended
BP	GO:0034470	ncRNA processing	None	Extended
BP	GO:0034641	cellular nitrogen compound metabolic process	None	Extended
BP	GO:0034660	ncRNA metabolic process	None	Extended
BP	GO:0043170	macromolecule metabolic process	None	Extended
BP	GO:0043412	macromolecule modification	None	Extended
BP	GO:0043414	macromolecule methylation	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0044260	cellular macromolecule metabolic process	None	Extended
BP	GO:0046483	heterocycle metabolic process	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
BP	GO:0090304	nucleic acid metabolic process	None	Extended
BP	GO:1901360	organic cyclic compound metabolic process	None	Extended

Toggle parental

Type	GO Term	Name	Evidence	Source
BP	GO:0000462	maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)	IEP	Enrichment
MF	GO:0003674	molecular_function	IEP	Enrichment
MF	GO:0003676	nucleic acid binding	IEP	Enrichment
MF	GO:0003723	RNA binding	IEP	Enrichment
MF	GO:0004540	ribonuclease activity	IEP	Enrichment
MF	GO:0004749	ribose phosphate diphosphokinase activity	IEP	Enrichment
MF	GO:0004809	tRNA (guanine-N2-)-methyltransferase activity	IEP	Enrichment
MF	GO:0005488	binding	IEP	Enrichment
MF	GO:0005515	protein binding	IEP	Enrichment
CC	GO:0005730	nucleolus	IEP	Enrichment
BP	GO:0006364	rRNA processing	IEP	Enrichment
MF	GO:0008168	methyltransferase activity	IEP	Enrichment
MF	GO:0008170	N-methyltransferase activity	IEP	Enrichment
MF	GO:0008173	RNA methyltransferase activity	IEP	Enrichment
MF	GO:0008175	tRNA methyltransferase activity	IEP	Enrichment
MF	GO:0008757	S-adenosylmethionine-dependent methyltransferase activity	IEP	Enrichment
BP	GO:0016072	rRNA metabolic process	IEP	Enrichment
MF	GO:0016423	tRNA (guanine) methyltransferase activity	IEP	Enrichment
MF	GO:0016426	tRNA (adenine) methyltransferase activity	IEP	Enrichment
MF	GO:0016429	tRNA (adenine-N1-)-methyltransferase activity	IEP	Enrichment
MF	GO:0016741	transferase activity, transferring one-carbon groups	IEP	Enrichment
MF	GO:0016778	diphosphotransferase activity	IEP	Enrichment
BP	GO:0030490	maturation of SSU-rRNA	IEP	Enrichment
CC	GO:0043226	organelle	IEP	Enrichment
CC	GO:0043229	intracellular organelle	IEP	Enrichment
MF	GO:0097159	organic cyclic compound binding	IEP	Enrichment
MF	GO:0140098	catalytic activity, acting on RNA	IEP	Enrichment
MF	GO:0140101	catalytic activity, acting on a tRNA	IEP	Enrichment
MF	GO:1901363	heterocyclic compound binding	IEP	Enrichment

InterPro domains	Description	Start	Stop
IPR017423	TRM6	6	243

External Links

No external refs found!

Cre12.g543100 (30792753)

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation