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  5. Cre12.g541300

Cre12.g541300 (30792645)


Aliases : 30792645

Description : Katanin p60 ATPase-containing subunit A1 OS=Arabidopsis thaliana


Gene families : OG_01_0000074 (OrthoFinder) Phylogenetic Tree(s): OG0000074_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Cre12.g541300
Cluster HCCA: Cluster_129

Target Alias Description ECC score Gene Family Method Actions
Cpa|evm.model.tig00000093.212 tig00000093_g3637.t1 Enzyme classification.EC_3 hydrolases.EC_3.6 hydrolase... 0.02 OrthoFinder
Cpa|evm.model.tig00001126.11 tig00001126_g7122.t1 Protein SUPPRESSOR OF K(+) TRANSPORT GROWTH DEFECT 1... 0.02 OrthoFinder
Cpa|evm.model.tig00020930.23 tig00020930_g16032.t1 ATPase family AAA domain-containing protein FIGL1... 0.02 OrthoFinder
Cpa|evm.model.tig00021179.32 tig00021179_g19247.t1 Katanin p60 ATPase-containing subunit A1 OS=Arabidopsis thaliana 0.02 OrthoFinder
Cz04g31240.t1 No alias Vps4 oligomerisation, C-terminal; ATPase, AAA-type,... 0.03 OrthoFinder
Cz16g13090.t1 No alias ATPase, AAA-type, core; AAA ATPase, AAA+ lid domain... 0.02 OrthoFinder
Dusal.0064s00001.1 33190297 ATPase, AAA-type, core; AAA ATPase, AAA+ lid domain;... 0.01 OrthoFinder
Dusal.0318s00001.1 33185642 ATPase, AAA-type, core [Interproscan]. 0.02 OrthoFinder
Sro566_g167770.1 Contig3739.g28672 Fidgetin-like protein 1 0.01 OrthoFinder
Sro750_g196930.1 Contig993.g10028 Proteasome-activating nucleotidase 0.01 OrthoFinder
TP19G02030.1 No alias ATPase, AAA-type, core; Vps4 oligomerisation,... 0.02 OrthoFinder
Vocar.0041s0001.1 32888711 ATPase, AAA-type, core; AAA ATPase, AAA+ lid domain... 0.02 OrthoFinder
XM_002501909.1 MICPUN_97315, 97315 Microtubule-severing protein katanin 60kDa subunit (KAT1) 0.03 OrthoFinder
XM_002504323.1 MICPUN_113360, 113360 MIT; ATPase, AAA-type, core; Vps4 oligomerisation,... 0.02 OrthoFinder
lcl|LHPG02000013.1_cds_PRW44343.1_2378 PRW44343 Vacuolar sorting-associated 4-like 0.02 OrthoFinder

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0004252 serine-type endopeptidase activity IEP Enrichment
MF GO:0004540 ribonuclease activity IEP Enrichment
BP GO:0006397 mRNA processing IEP Enrichment
MF GO:0008134 transcription factor binding IEP Enrichment
MF GO:0008236 serine-type peptidase activity IEP Enrichment
MF GO:0017025 TBP-class protein binding IEP Enrichment
MF GO:0017171 serine hydrolase activity IEP Enrichment
CC GO:0018995 host cellular component IEP Enrichment
MF GO:0022804 active transmembrane transporter activity IEP Enrichment
CC GO:0033643 host cell part IEP Enrichment
CC GO:0033646 host intracellular part IEP Enrichment
CC GO:0033647 host intracellular organelle IEP Enrichment
CC GO:0033648 host intracellular membrane-bounded organelle IEP Enrichment
CC GO:0042025 host cell nucleus IEP Enrichment
MF GO:0140296 general transcription initiation factor binding IEP Enrichment
InterPro domains Description Start Stop
IPR003959 ATPase_AAA_core 313 476
IPR041569 AAA_lid_3 502 531
No external refs found!