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  5. Cre12.g528950

Cre12.g528950 (30792859, PUF1)


Aliases : 30792859, PUF1

Description : Protein biosynthesis.cytosolic ribosome.large subunit (LSU).LSU processome component.ITS2 rRNA removal.APUM24 rRNA processing factor


Gene families : OG_01_0002296 (OrthoFinder) Phylogenetic Tree(s): OG0002296_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Cre12.g528950
Cluster HCCA: Cluster_18

Target Alias Description ECC score Gene Family Method Actions
Cpa|evm.model.tig00000615.61 tig00000615_g2590.t1 Protein biosynthesis.cytosolic ribosome.large subunit... 0.11 OrthoFinder
Cz05g20100.t1 No alias Hypothetical protein 0.11 OrthoFinder
Cz05g20110.t1 No alias Hypothetical protein 0.19 OrthoFinder
Cz05g20120.t1 No alias Pumilio RNA-binding repeat [Interproscan]. 0.28 OrthoFinder
EOD31912 No alias CPL domain [Interproscan]. 0.19 OrthoFinder
EOD31916 No alias Hypothetical protein [Ensembl]. 0.1 OrthoFinder
OT_11G00160.1 No alias Pumilio RNA-binding repeat [Interproscan]. 0.18 OrthoFinder
PTI_12G01430.1 No alias CPL domain [Interproscan]. 0.23 OrthoFinder
Sro796_g203760.1 Contig2034.g17474 Pumilio homolog 3 0.23 OrthoFinder
TP07G00800.1 No alias CPL domain [Interproscan]. 0.12 OrthoFinder
Transcript_contig_62331 62331 Hypothetical protein 0.07 OrthoFinder
Vocar.0037s0031.1 32897488 Hypothetical protein 0.03 OrthoFinder
XM_002509079.1 MICPUN_103335, 103335 Hypothetical protein 0.14 OrthoFinder
XM_003061587.1 MicpuC2_51006, 51006 Hypothetical protein 0.08 OrthoFinder
lcl|LHPG02000001.1_cds_PRW61613.1_664 PRW61613 Pumilio-like protein 24 0.19 OrthoFinder
lcl|VRMN01000006.1_cds_KAA8493501.1_4263 KAA8493501 Pumilio-like 3 0.07 OrthoFinder

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
BP GO:0000462 maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) IEP Enrichment
BP GO:0001510 RNA methylation IEP Enrichment
MF GO:0003676 nucleic acid binding IEP Enrichment
MF GO:0005488 binding IEP Enrichment
MF GO:0005515 protein binding IEP Enrichment
CC GO:0005575 cellular_component IEP Enrichment
CC GO:0005634 nucleus IEP Enrichment
CC GO:0005730 nucleolus IEP Enrichment
CC GO:0005732 sno(s)RNA-containing ribonucleoprotein complex IEP Enrichment
BP GO:0006139 nucleobase-containing compound metabolic process IEP Enrichment
BP GO:0006364 rRNA processing IEP Enrichment
BP GO:0006396 RNA processing IEP Enrichment
BP GO:0006725 cellular aromatic compound metabolic process IEP Enrichment
BP GO:0006807 nitrogen compound metabolic process IEP Enrichment
MF GO:0008134 transcription factor binding IEP Enrichment
BP GO:0008152 metabolic process IEP Enrichment
BP GO:0009987 cellular process IEP Enrichment
BP GO:0016070 RNA metabolic process IEP Enrichment
BP GO:0016072 rRNA metabolic process IEP Enrichment
BP GO:0030488 tRNA methylation IEP Enrichment
BP GO:0030490 maturation of SSU-rRNA IEP Enrichment
CC GO:0030684 preribosome IEP Enrichment
CC GO:0032040 small-subunit processome IEP Enrichment
BP GO:0032259 methylation IEP Enrichment
BP GO:0034470 ncRNA processing IEP Enrichment
BP GO:0034641 cellular nitrogen compound metabolic process IEP Enrichment
BP GO:0034660 ncRNA metabolic process IEP Enrichment
BP GO:0043170 macromolecule metabolic process IEP Enrichment
CC GO:0043226 organelle IEP Enrichment
CC GO:0043227 membrane-bounded organelle IEP Enrichment
CC GO:0043228 non-membrane-bounded organelle IEP Enrichment
CC GO:0043229 intracellular organelle IEP Enrichment
CC GO:0043231 intracellular membrane-bounded organelle IEP Enrichment
CC GO:0043232 intracellular non-membrane-bounded organelle IEP Enrichment
BP GO:0043414 macromolecule methylation IEP Enrichment
BP GO:0044237 cellular metabolic process IEP Enrichment
BP GO:0044238 primary metabolic process IEP Enrichment
BP GO:0046483 heterocycle metabolic process IEP Enrichment
BP GO:0071704 organic substance metabolic process IEP Enrichment
BP GO:0090304 nucleic acid metabolic process IEP Enrichment
MF GO:0097159 organic cyclic compound binding IEP Enrichment
CC GO:0110165 cellular anatomical entity IEP Enrichment
BP GO:1901360 organic cyclic compound metabolic process IEP Enrichment
MF GO:1901363 heterocyclic compound binding IEP Enrichment
CC GO:1990904 ribonucleoprotein complex IEP Enrichment
InterPro domains Description Start Stop
IPR001313 Pumilio_RNA-bd_rpt 113 144
No external refs found!