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  5. Cre12.g493400

Cre12.g493400 (30791789, SMC4)


Aliases : 30791789, SMC4

Description : Cell cycle.mitosis and meiosis.chromatin condensation.condensin I/II complex.CAP-C/SMC4 component


Gene families : OG_01_0001971 (OrthoFinder) Phylogenetic Tree(s): OG0001971_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Cre12.g493400
Cluster HCCA: Cluster_47

Target Alias Description ECC score Gene Family Method Actions
Cpa|evm.model.tig00000711.41 tig00000711_g3404.t1 Cell cycle.mitosis and meiosis.chromatin... 0.06 OrthoFinder
Cz03g14220.t1 No alias RecF/RecN/SMC, N-terminal; SMCs flexible hinge [Interproscan]. 0.08 OrthoFinder
Cz03g14230.t1 No alias RecF/RecN/SMC, N-terminal [Interproscan]. 0.11 OrthoFinder
Dusal.0297s00010.1 33197376 RecF/RecN/SMC, N-terminal [Interproscan]. 0.01 OrthoFinder
Dusal.0297s00013.1 33197366 RecF/RecN/SMC, N-terminal [Interproscan]. 0.04 OrthoFinder
EOD07120 No alias RecF/RecN/SMC, N-terminal [Interproscan]. 0.05 OrthoFinder
EOD10750 No alias RecF/RecN/SMC, N-terminal [Interproscan]. 0.06 OrthoFinder
EOD30554 No alias SMCs flexible hinge [Interproscan]. 0.05 OrthoFinder
EOD40964 No alias RecF/RecN/SMC, N-terminal [Interproscan]. 0.02 OrthoFinder
OT_06G01300.1 No alias RecF/RecN/SMC, N-terminal; SMCs flexible hinge [Interproscan]. 0.04 OrthoFinder
PTI_03G05440.1 No alias RecF/RecN/SMC, N-terminal; SMCs flexible hinge [Interproscan]. 0.05 OrthoFinder
Sro1170_g248720.1 Contig3531.g27301 Structural maintenance of chromosomes protein 4 (Fragment) 0.02 OrthoFinder
TP14G01310.1 No alias RecF/RecN/SMC, N-terminal; SMCs flexible hinge [Interproscan]. 0.04 OrthoFinder
Vocar.0031s0036.1 32890031 SMCs flexible hinge; RecF/RecN/SMC, N-terminal [Interproscan]. 0.11 OrthoFinder
XM_002500796.1 MICPUN_56721, 56721 Condensin complex component 0.05 OrthoFinder
XM_003059384.1 MicpuC2_33825, 33825 Condensin complex component 0.03 OrthoFinder
lcl|BLLF01001573.1_cds_GFH20090.1_14567 HaLaN_17159, GFH20090 Structural maintenance of chromosomes protein 4 0.03 OrthoFinder
lcl|BLLF01001573.1_cds_GFH20092.1_14569 HaLaN_17161, GFH20092 Structural maintenance of chromosomes protein 0.03 OrthoFinder
lcl|LHPG02000007.1_cds_PRW57046.1_8805 PRW57046 Structural maintenance of chromosomes 4 0.1 OrthoFinder
lcl|VRMN01000001.1_cds_KAA8499969.1_8922 KAA8499969 Structural maintenance of chromosomes protein 4 0.07 OrthoFinder

Type GO Term Name Evidence Source
MF GO:0005515 protein binding IEA Interproscan
MF GO:0005524 ATP binding IEA Interproscan
CC GO:0005694 chromosome IEA Interproscan
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Type GO Term Name Evidence Source
CC GO:0000776 kinetochore IEP Enrichment
CC GO:0000796 condensin complex IEP Enrichment
MF GO:0003676 nucleic acid binding IEP Enrichment
MF GO:0003677 DNA binding IEP Enrichment
MF GO:0003774 motor activity IEP Enrichment
MF GO:0003777 microtubule motor activity IEP Enrichment
MF GO:0003896 DNA primase activity IEP Enrichment
MF GO:0003909 DNA ligase activity IEP Enrichment
MF GO:0003910 DNA ligase (ATP) activity IEP Enrichment
MF GO:0003916 DNA topoisomerase activity IEP Enrichment
MF GO:0003918 DNA topoisomerase type II (double strand cut, ATP-hydrolyzing) activity IEP Enrichment
MF GO:0004146 dihydrofolate reductase activity IEP Enrichment
CC GO:0005634 nucleus IEP Enrichment
BP GO:0006259 DNA metabolic process IEP Enrichment
BP GO:0006265 DNA topological change IEP Enrichment
BP GO:0006270 DNA replication initiation IEP Enrichment
BP GO:0006310 DNA recombination IEP Enrichment
BP GO:0006575 cellular modified amino acid metabolic process IEP Enrichment
BP GO:0006760 folic acid-containing compound metabolic process IEP Enrichment
BP GO:0006928 movement of cell or subcellular component IEP Enrichment
BP GO:0007017 microtubule-based process IEP Enrichment
BP GO:0007018 microtubule-based movement IEP Enrichment
BP GO:0009396 folic acid-containing compound biosynthetic process IEP Enrichment
MF GO:0016462 pyrophosphatase activity IEP Enrichment
MF GO:0016645 oxidoreductase activity, acting on the CH-NH group of donors IEP Enrichment
MF GO:0016646 oxidoreductase activity, acting on the CH-NH group of donors, NAD or NADP as acceptor IEP Enrichment
MF GO:0016817 hydrolase activity, acting on acid anhydrides IEP Enrichment
MF GO:0016818 hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides IEP Enrichment
MF GO:0016886 ligase activity, forming phosphoric ester bonds IEP Enrichment
MF GO:0017111 nucleoside-triphosphatase activity IEP Enrichment
CC GO:0031262 Ndc80 complex IEP Enrichment
BP GO:0042398 cellular modified amino acid biosynthetic process IEP Enrichment
CC GO:0042555 MCM complex IEP Enrichment
BP GO:0042558 pteridine-containing compound metabolic process IEP Enrichment
BP GO:0042559 pteridine-containing compound biosynthetic process IEP Enrichment
CC GO:0043227 membrane-bounded organelle IEP Enrichment
CC GO:0043231 intracellular membrane-bounded organelle IEP Enrichment
BP GO:0046653 tetrahydrofolate metabolic process IEP Enrichment
BP GO:0046654 tetrahydrofolate biosynthetic process IEP Enrichment
BP GO:0071103 DNA conformation change IEP Enrichment
CC GO:0099080 supramolecular complex IEP Enrichment
MF GO:0140097 catalytic activity, acting on DNA IEP Enrichment
InterPro domains Description Start Stop
IPR010935 SMC_hinge 548 664
IPR003395 RecF/RecN/SMC_N 18 1223
No external refs found!