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  5. Cre10.g436650

Cre10.g436650 (30789761)


Aliases : 30789761

Description : DEAD-box ATP-dependent RNA helicase 50 OS=Arabidopsis thaliana


Gene families : OG_01_0001185 (OrthoFinder) Phylogenetic Tree(s): OG0001185_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Cre10.g436650
Cluster HCCA: Cluster_15

Target Alias Description ECC score Gene Family Method Actions
Cz04g18170.t1 No alias Helicase, C-terminal; DEAD/DEAH box helicase domain... 0.02 OrthoFinder
Cz06g11130.t1 No alias Helicase, C-terminal; DEAD/DEAH box helicase domain... 0.03 OrthoFinder
Dusal.0045s00001.1 33191641 Helicase, C-terminal; DEAD/DEAH box helicase domain... 0.03 OrthoFinder
Dusal.0225s00011.1 33185188 Helicase, C-terminal; DEAD/DEAH box helicase domain... 0.02 OrthoFinder
OT_05G03300.1 No alias Helicase, C-terminal; DEAD/DEAH box helicase domain... 0.13 OrthoFinder
OT_10G03270.1 No alias Helicase, C-terminal; DEAD/DEAH box helicase domain... 0.14 OrthoFinder
PTI_13G02050.1 No alias Helicase, C-terminal; DEAD/DEAH box helicase domain... 0.01 OrthoFinder
PTI_20G02340.1 No alias Helicase, C-terminal; DEAD/DEAH box helicase domain... 0.11 OrthoFinder
Sro1441_g272930.1 Contig2512.g20550 Dependent RNA helicase 0.04 OrthoFinder
TP04G05770.1 No alias Helicase, C-terminal; DEAD/DEAH box helicase domain... 0.08 OrthoFinder
TP12G00750.1 No alias Helicase, C-terminal; DEAD/DEAH box helicase domain... 0.04 OrthoFinder
Vocar.0001s0986.1 32885925 DEAD/DEAH box helicase domain; Helicase, C-terminal... 0.04 OrthoFinder
Vocar.0001s1340.1 32885040 DEAD/DEAH box helicase domain; Helicase, C-terminal... 0.04 OrthoFinder
XM_002503395.1 MICPUN_59763, 59763 Helicase, C-terminal; K Homology domain, type 1;... 0.14 OrthoFinder
XM_003056811.1 MicpuC2_56357, 56357 Helicase, C-terminal; DEAD/DEAH box helicase domain... 0.03 OrthoFinder
lcl|LHPG02000026.1_cds_PRW18294.1_5877 PRW18294 DEAD-box ATP-dependent RNA helicase 50 0.11 OrthoFinder
lcl|LHPG02000029.1_cds_PRW05784.1_6102 PRW05784 DEAD-box ATP-dependent RNA helicase 39 0.04 OrthoFinder
lcl|VRMN01000014.1_cds_KAA8491354.1_2355 KAA8491354 DEAD-box ATP-dependent RNA helicase 39 0.05 OrthoFinder

Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEA Interproscan
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Type GO Term Name Evidence Source
BP GO:0000462 maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) IEP Enrichment
BP GO:0001510 RNA methylation IEP Enrichment
BP GO:0001522 pseudouridine synthesis IEP Enrichment
MF GO:0003723 RNA binding IEP Enrichment
MF GO:0003724 RNA helicase activity IEP Enrichment
MF GO:0005515 protein binding IEP Enrichment
CC GO:0005634 nucleus IEP Enrichment
CC GO:0005730 nucleolus IEP Enrichment
CC GO:0005732 sno(s)RNA-containing ribonucleoprotein complex IEP Enrichment
BP GO:0006139 nucleobase-containing compound metabolic process IEP Enrichment
BP GO:0006364 rRNA processing IEP Enrichment
BP GO:0006396 RNA processing IEP Enrichment
BP GO:0006399 tRNA metabolic process IEP Enrichment
BP GO:0006400 tRNA modification IEP Enrichment
BP GO:0006725 cellular aromatic compound metabolic process IEP Enrichment
BP GO:0006807 nitrogen compound metabolic process IEP Enrichment
BP GO:0008033 tRNA processing IEP Enrichment
BP GO:0008150 biological_process IEP Enrichment
BP GO:0008152 metabolic process IEP Enrichment
MF GO:0008168 methyltransferase activity IEP Enrichment
MF GO:0008173 RNA methyltransferase activity IEP Enrichment
MF GO:0008175 tRNA methyltransferase activity IEP Enrichment
MF GO:0008649 rRNA methyltransferase activity IEP Enrichment
MF GO:0008757 S-adenosylmethionine-dependent methyltransferase activity IEP Enrichment
BP GO:0009451 RNA modification IEP Enrichment
BP GO:0009987 cellular process IEP Enrichment
BP GO:0016070 RNA metabolic process IEP Enrichment
BP GO:0016072 rRNA metabolic process IEP Enrichment
MF GO:0016426 tRNA (adenine) methyltransferase activity IEP Enrichment
MF GO:0016429 tRNA (adenine-N1-)-methyltransferase activity IEP Enrichment
MF GO:0016741 transferase activity, transferring one-carbon groups IEP Enrichment
MF GO:0017150 tRNA dihydrouridine synthase activity IEP Enrichment
BP GO:0030488 tRNA methylation IEP Enrichment
BP GO:0030490 maturation of SSU-rRNA IEP Enrichment
CC GO:0030684 preribosome IEP Enrichment
CC GO:0032040 small-subunit processome IEP Enrichment
BP GO:0032259 methylation IEP Enrichment
BP GO:0034470 ncRNA processing IEP Enrichment
BP GO:0034641 cellular nitrogen compound metabolic process IEP Enrichment
BP GO:0034660 ncRNA metabolic process IEP Enrichment
BP GO:0043170 macromolecule metabolic process IEP Enrichment
CC GO:0043226 organelle IEP Enrichment
CC GO:0043229 intracellular organelle IEP Enrichment
BP GO:0043412 macromolecule modification IEP Enrichment
BP GO:0043414 macromolecule methylation IEP Enrichment
BP GO:0044237 cellular metabolic process IEP Enrichment
BP GO:0044238 primary metabolic process IEP Enrichment
BP GO:0046483 heterocycle metabolic process IEP Enrichment
BP GO:0071704 organic substance metabolic process IEP Enrichment
BP GO:0090304 nucleic acid metabolic process IEP Enrichment
MF GO:0140098 catalytic activity, acting on RNA IEP Enrichment
MF GO:0140101 catalytic activity, acting on a tRNA IEP Enrichment
MF GO:0140102 catalytic activity, acting on a rRNA IEP Enrichment
BP GO:1901360 organic cyclic compound metabolic process IEP Enrichment
CC GO:1990904 ribonucleoprotein complex IEP Enrichment
InterPro domains Description Start Stop
IPR011545 DEAD/DEAH_box_helicase_dom 276 461
IPR001650 Helicase_C 510 682
No external refs found!