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  5. Cre10.g428750

Cre10.g428750 (30790321)


Aliases : 30790321

Description : Protein biosynthesis.cytosolic ribosome.small subunit (SSU).SSU processome.RRP5 assembly factor


Gene families : OG_01_0001807 (OrthoFinder) Phylogenetic Tree(s): OG0001807_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Cre10.g428750
Cluster HCCA: Cluster_18

Target Alias Description ECC score Gene Family Method Actions
Cpa|evm.model.tig00000605.10 tig00000605_g2475.t1 Protein biosynthesis.cytosolic ribosome.small subunit... 0.13 OrthoFinder
Cpa|evm.model.tig00000605.11 tig00000605_g2478.t1 rRNA biogenesis protein RRP5 OS=Arabidopsis thaliana 0.08 OrthoFinder
Cz01g27020.t1 No alias S1 domain; Suppressor of forked [Interproscan]. 0.24 OrthoFinder
EOD17851 No alias Suppressor of forked [Interproscan]. 0.15 OrthoFinder
OT_10G00010.1 No alias S1 domain; Suppressor of forked [Interproscan]. 0.02 OrthoFinder
PTI_19G01960.1 No alias S1 domain [Interproscan]. 0.12 OrthoFinder
Sro264_g102530.1 Contig921.g9679 Protein RRP5 0.17 OrthoFinder
TP17G00890.1 No alias Suppressor of forked [Interproscan]. 0.05 OrthoFinder
Transcript_contig_69303 69303 Hypothetical protein 0.08 OrthoFinder
Transcript_contig_78480 78480 S1 domain [Interproscan]. 0.11 OrthoFinder
Vocar.0005s0239.1 32883847 S1 domain; Suppressor of forked [Interproscan]. 0.08 OrthoFinder
XM_002504294.1 MICPUN_107434, 107434 Hypothetical protein (RRP5) 0.18 OrthoFinder
XM_003064819.1 MicpuC2_54811, 54811 Suppressor of forked; S1 domain [Interproscan]. 0.08 OrthoFinder
lcl|BLLF01003094.1_cds_GFH26329.1_20806 HaLaN_24462, GFH26329 Suppressor of forked [Interproscan]. 0.15 OrthoFinder
lcl|BLLF01003604.1_cds_GFH27756.1_22233 HaLaN_26132, GFH27756 Hypothetical protein 0.05 OrthoFinder
lcl|LHPG02000009.1_cds_PRW55969.1_10165 PRW55969 RNA binding rRNA processing 0.22 OrthoFinder
lcl|LHPG02000021.1_cds_PRW20900.1_4989 PRW20900 RRP5-like protein 0.22 OrthoFinder
lcl|VRMN01000002.1_cds_KAA8497028.1_757 KAA8497028 RRNA biogenesis protein rrp5 0.08 OrthoFinder

Type GO Term Name Evidence Source
CC GO:0005634 nucleus IEA Interproscan
BP GO:0006397 mRNA processing IEA Interproscan
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Type GO Term Name Evidence Source
BP GO:0000462 maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) IEP Enrichment
BP GO:0001510 RNA methylation IEP Enrichment
MF GO:0003674 molecular_function IEP Enrichment
MF GO:0003676 nucleic acid binding IEP Enrichment
MF GO:0003723 RNA binding IEP Enrichment
MF GO:0003899 DNA-directed 5'-3' RNA polymerase activity IEP Enrichment
MF GO:0004749 ribose phosphate diphosphokinase activity IEP Enrichment
MF GO:0004809 tRNA (guanine-N2-)-methyltransferase activity IEP Enrichment
MF GO:0005488 binding IEP Enrichment
MF GO:0005515 protein binding IEP Enrichment
CC GO:0005730 nucleolus IEP Enrichment
CC GO:0005732 sno(s)RNA-containing ribonucleoprotein complex IEP Enrichment
BP GO:0006351 transcription, DNA-templated IEP Enrichment
BP GO:0006364 rRNA processing IEP Enrichment
BP GO:0006399 tRNA metabolic process IEP Enrichment
BP GO:0008033 tRNA processing IEP Enrichment
MF GO:0008134 transcription factor binding IEP Enrichment
MF GO:0008168 methyltransferase activity IEP Enrichment
MF GO:0008170 N-methyltransferase activity IEP Enrichment
MF GO:0008173 RNA methyltransferase activity IEP Enrichment
MF GO:0008175 tRNA methyltransferase activity IEP Enrichment
MF GO:0008757 S-adenosylmethionine-dependent methyltransferase activity IEP Enrichment
BP GO:0009451 RNA modification IEP Enrichment
BP GO:0016072 rRNA metabolic process IEP Enrichment
MF GO:0016423 tRNA (guanine) methyltransferase activity IEP Enrichment
MF GO:0016426 tRNA (adenine) methyltransferase activity IEP Enrichment
MF GO:0016429 tRNA (adenine-N1-)-methyltransferase activity IEP Enrichment
MF GO:0016741 transferase activity, transferring one-carbon groups IEP Enrichment
MF GO:0016778 diphosphotransferase activity IEP Enrichment
MF GO:0016779 nucleotidyltransferase activity IEP Enrichment
MF GO:0017150 tRNA dihydrouridine synthase activity IEP Enrichment
BP GO:0030488 tRNA methylation IEP Enrichment
BP GO:0030490 maturation of SSU-rRNA IEP Enrichment
CC GO:0030684 preribosome IEP Enrichment
CC GO:0032040 small-subunit processome IEP Enrichment
BP GO:0032259 methylation IEP Enrichment
BP GO:0032774 RNA biosynthetic process IEP Enrichment
MF GO:0034062 5'-3' RNA polymerase activity IEP Enrichment
BP GO:0034470 ncRNA processing IEP Enrichment
BP GO:0034645 cellular macromolecule biosynthetic process IEP Enrichment
BP GO:0034660 ncRNA metabolic process IEP Enrichment
CC GO:0043228 non-membrane-bounded organelle IEP Enrichment
CC GO:0043232 intracellular non-membrane-bounded organelle IEP Enrichment
BP GO:0043414 macromolecule methylation IEP Enrichment
MF GO:0097159 organic cyclic compound binding IEP Enrichment
BP GO:0097659 nucleic acid-templated transcription IEP Enrichment
MF GO:0097747 RNA polymerase activity IEP Enrichment
MF GO:0140098 catalytic activity, acting on RNA IEP Enrichment
MF GO:0140101 catalytic activity, acting on a tRNA IEP Enrichment
MF GO:1901363 heterocyclic compound binding IEP Enrichment
CC GO:1990904 ribonucleoprotein complex IEP Enrichment
InterPro domains Description Start Stop
IPR008847 Suf 2058 2178
IPR003029 S1_domain 1626 1700
No external refs found!