Cre09.g397845 (30781329)

Aliases : 30781329

Description : DNA mismatch repair protein MSH3 OS=Arabidopsis thaliana

Gene families : OG_01_0000301 (OrthoFinder) Phylogenetic Tree(s): OG0000301_tree

Sequence : coding (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: Cre09.g397845
Cluster	HCCA: Cluster_11

Target	Alias	Description	ECC score	Gene Family Method
Cpa\|evm.model.tig00021616.10	tig00021616_g22915.t1	DNA mismatch repair protein MSH3 OS=Arabidopsis thaliana	0.01	OrthoFinder
Cz04g14260.t1	No alias	DNA mismatch repair protein MutS, connector domain; DNA...	0.02	OrthoFinder
EOD10682	No alias	Methyltransferase domain; GNAT domain; Protein of...	0.02	OrthoFinder
EOD36720	No alias	DNA mismatch repair protein MutS, connector domain; DNA...	0.02	OrthoFinder
OT_06G02660.1	No alias	DNA mismatch repair protein MutS, connector domain; DNA...	0.06	OrthoFinder
SymbC1.scaffold5277.3	5277.3	DNA mismatch repair protein MutS-like, N-terminal [Interproscan].	0.01	OrthoFinder
Vocar.0003s0463.1	32889088	DNA mismatch repair protein MutS, C-terminal; DNA...	0.02	OrthoFinder
XM_002508776.1	MICPUN_62040, 62040	DNA mismatch repair protein MutS-like, N-terminal; DNA...	0.03	OrthoFinder
XM_003059453.1	MicpuC2_40215, 40215	DNA mismatch repair protein MutS, core; DNA mismatch...	0.03	OrthoFinder
lcl\|VRMN01000002.1_cds_KAA8496452.1_181	KAA8496452	DNA mismatch repair protein Msh3	0.01	OrthoFinder

Type	GO Term	Name	Evidence	Source
MF	GO:0000166	nucleotide binding	None	Extended
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003676	nucleic acid binding	None	Extended
MF	GO:0003677	DNA binding	None	Extended
MF	GO:0003690	double-stranded DNA binding	None	Extended
MF	GO:0005488	binding	None	Extended
MF	GO:0005524	ATP binding	IEA	Interproscan
BP	GO:0006139	nucleobase-containing compound metabolic process	None	Extended
BP	GO:0006259	DNA metabolic process	None	Extended
BP	GO:0006281	DNA repair	None	Extended
BP	GO:0006298	mismatch repair	IEA	Interproscan
BP	GO:0006725	cellular aromatic compound metabolic process	None	Extended
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0006950	response to stress	None	Extended
BP	GO:0006974	cellular response to DNA damage stimulus	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
BP	GO:0009987	cellular process	None	Extended
MF	GO:0017076	purine nucleotide binding	None	Extended
MF	GO:0030554	adenyl nucleotide binding	None	Extended
MF	GO:0030983	mismatched DNA binding	IEA	Interproscan
MF	GO:0032553	ribonucleotide binding	None	Extended
MF	GO:0032555	purine ribonucleotide binding	None	Extended
MF	GO:0032559	adenyl ribonucleotide binding	None	Extended
BP	GO:0033554	cellular response to stress	None	Extended
BP	GO:0034641	cellular nitrogen compound metabolic process	None	Extended
MF	GO:0035639	purine ribonucleoside triphosphate binding	None	Extended
MF	GO:0036094	small molecule binding	None	Extended
MF	GO:0043167	ion binding	None	Extended
MF	GO:0043168	anion binding	None	Extended
BP	GO:0043170	macromolecule metabolic process	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0044260	cellular macromolecule metabolic process	None	Extended
BP	GO:0046483	heterocycle metabolic process	None	Extended
BP	GO:0050896	response to stimulus	None	Extended
BP	GO:0051716	cellular response to stimulus	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
BP	GO:0090304	nucleic acid metabolic process	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
MF	GO:0097367	carbohydrate derivative binding	None	Extended
MF	GO:1901265	nucleoside phosphate binding	None	Extended
BP	GO:1901360	organic cyclic compound metabolic process	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended

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Type	GO Term	Name	Evidence	Source
MF	GO:0000702	oxidized base lesion DNA N-glycosylase activity	IEP	Enrichment
MF	GO:0003684	damaged DNA binding	IEP	Enrichment
MF	GO:0003689	DNA clamp loader activity	IEP	Enrichment
CC	GO:0005663	DNA replication factor C complex	IEP	Enrichment
BP	GO:0006289	nucleotide-excision repair	IEP	Enrichment
MF	GO:0008534	oxidized purine nucleobase lesion DNA N-glycosylase activity	IEP	Enrichment
MF	GO:0016788	hydrolase activity, acting on ester bonds	IEP	Enrichment
MF	GO:0016799	hydrolase activity, hydrolyzing N-glycosyl compounds	IEP	Enrichment
MF	GO:0019104	DNA N-glycosylase activity	IEP	Enrichment
MF	GO:0140097	catalytic activity, acting on DNA	IEP	Enrichment

InterPro domains	Description	Start	Stop
IPR007696	DNA_mismatch_repair_MutS_core	6	388
IPR000432	DNA_mismatch_repair_MutS_C	525	631
IPR000432	DNA_mismatch_repair_MutS_C	775	814

External Links

No external refs found!

Cre09.g397845 (30781329)

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation