Cre08.g370601 (30774105)

Aliases : 30774105

Description : Protein biosynthesis.cytosolic ribosome.small subunit (SSU).SSU processome.Mpp10 assembly factor

Gene families : OG_01_0004112 (OrthoFinder) Phylogenetic Tree(s): OG0004112_tree

Sequence : coding (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: Cre08.g370601
Cluster	HCCA: Cluster_18

Target	Alias	Description	ECC score	Gene Family Method
Cpa\|evm.model.tig00020604.12	tig00020604_g11847.t1	Protein biosynthesis.cytosolic ribosome.small subunit...	0.05	OrthoFinder
Cz05g15180.t1	No alias	U3 small nucleolar ribonucleoprotein complex, subunit...	0.06	OrthoFinder
Cz05g15190.t1	No alias	U3 small nucleolar ribonucleoprotein complex, subunit...	0.1	OrthoFinder
EOD27130	No alias	U3 small nucleolar ribonucleoprotein complex, subunit...	0.13	OrthoFinder
OT_05G01480.1	No alias	U3 small nucleolar ribonucleoprotein complex, subunit...	0.14	OrthoFinder
PTI_12G00600.1	No alias	U3 small nucleolar ribonucleoprotein complex, subunit...	0.27	OrthoFinder
Sro767_g199410.1	Contig2377.g19529	Nucleolar ribonucleoprotein protein MPP10	0.26	OrthoFinder
XM_002507036.1	MICPUN_113197, 113197	U3 small nucleolar ribonucleoprotein component (MPP10)	0.02	OrthoFinder
lcl\|BLLF01002042.1_cds_GFH22447.1_16924	HaLaN_19916, GFH22447	U3 small nucleolar ribonucleoprotein complex, subunit...	0.03	OrthoFinder
lcl\|LHPG02000004.1_cds_PRW59087.1_7023	PRW59087	U3 small nucleolar ribonucleo MPP10-like isoform X1	0.17	OrthoFinder
lcl\|VRMN01000009.1_cds_KAA8492630.1_9323	KAA8492630	U3 small nucleolar ribonucleoprotein MPP10	0.02	OrthoFinder

Type	GO Term	Name	Evidence	Source
CC	GO:0005575	cellular_component	None	Extended
CC	GO:0005634	nucleus	IEA	Interproscan
CC	GO:0005732	sno(s)RNA-containing ribonucleoprotein complex	IEA	Interproscan
BP	GO:0006139	nucleobase-containing compound metabolic process	None	Extended
BP	GO:0006364	rRNA processing	IEA	Interproscan
BP	GO:0006396	RNA processing	None	Extended
BP	GO:0006725	cellular aromatic compound metabolic process	None	Extended
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
BP	GO:0009987	cellular process	None	Extended
BP	GO:0016070	RNA metabolic process	None	Extended
BP	GO:0016072	rRNA metabolic process	None	Extended
CC	GO:0032991	protein-containing complex	None	Extended
BP	GO:0034470	ncRNA processing	None	Extended
BP	GO:0034641	cellular nitrogen compound metabolic process	None	Extended
BP	GO:0034660	ncRNA metabolic process	None	Extended
BP	GO:0043170	macromolecule metabolic process	None	Extended
CC	GO:0043226	organelle	None	Extended
CC	GO:0043227	membrane-bounded organelle	None	Extended
CC	GO:0043229	intracellular organelle	None	Extended
CC	GO:0043231	intracellular membrane-bounded organelle	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0046483	heterocycle metabolic process	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
BP	GO:0090304	nucleic acid metabolic process	None	Extended
CC	GO:0110165	cellular anatomical entity	None	Extended
BP	GO:1901360	organic cyclic compound metabolic process	None	Extended
CC	GO:1990904	ribonucleoprotein complex	None	Extended

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Type	GO Term	Name	Evidence	Source
BP	GO:0000462	maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)	IEP	Enrichment
BP	GO:0001510	RNA methylation	IEP	Enrichment
MF	GO:0003674	molecular_function	IEP	Enrichment
MF	GO:0003676	nucleic acid binding	IEP	Enrichment
MF	GO:0003723	RNA binding	IEP	Enrichment
MF	GO:0003724	RNA helicase activity	IEP	Enrichment
MF	GO:0005488	binding	IEP	Enrichment
MF	GO:0005515	protein binding	IEP	Enrichment
CC	GO:0005730	nucleolus	IEP	Enrichment
BP	GO:0006399	tRNA metabolic process	IEP	Enrichment
BP	GO:0008033	tRNA processing	IEP	Enrichment
MF	GO:0008134	transcription factor binding	IEP	Enrichment
MF	GO:0008168	methyltransferase activity	IEP	Enrichment
MF	GO:0008173	RNA methyltransferase activity	IEP	Enrichment
MF	GO:0008175	tRNA methyltransferase activity	IEP	Enrichment
MF	GO:0008757	S-adenosylmethionine-dependent methyltransferase activity	IEP	Enrichment
BP	GO:0009451	RNA modification	IEP	Enrichment
MF	GO:0016426	tRNA (adenine) methyltransferase activity	IEP	Enrichment
MF	GO:0016429	tRNA (adenine-N1-)-methyltransferase activity	IEP	Enrichment
MF	GO:0016741	transferase activity, transferring one-carbon groups	IEP	Enrichment
MF	GO:0017150	tRNA dihydrouridine synthase activity	IEP	Enrichment
BP	GO:0030488	tRNA methylation	IEP	Enrichment
BP	GO:0030490	maturation of SSU-rRNA	IEP	Enrichment
CC	GO:0030684	preribosome	IEP	Enrichment
CC	GO:0032040	small-subunit processome	IEP	Enrichment
BP	GO:0032259	methylation	IEP	Enrichment
CC	GO:0043228	non-membrane-bounded organelle	IEP	Enrichment
CC	GO:0043232	intracellular non-membrane-bounded organelle	IEP	Enrichment
BP	GO:0043414	macromolecule methylation	IEP	Enrichment
MF	GO:0097159	organic cyclic compound binding	IEP	Enrichment
MF	GO:0140098	catalytic activity, acting on RNA	IEP	Enrichment
MF	GO:0140101	catalytic activity, acting on a tRNA	IEP	Enrichment
MF	GO:1901363	heterocyclic compound binding	IEP	Enrichment

InterPro domains	Description	Start	Stop
IPR012173	Mpp10	188	820

External Links

No external refs found!

Cre08.g370601 (30774105)

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation