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  5. Cre07.g348250

Cre07.g348250 (30775230)


Aliases : 30775230

Description : Ribosome biogenesis protein NOP53 OS=Arabidopsis thaliana


Gene families : OG_01_0005329 (OrthoFinder) Phylogenetic Tree(s): OG0005329_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Cre07.g348250
Cluster HCCA: Cluster_18

Target Alias Description ECC score Gene Family Method Actions
Dusal.0161s00013.1 33201276 Ribosome biogenesis protein Nop53/GLTSCR2 [Interproscan]. 0.07 OrthoFinder
OT_03G05420.1 No alias Ribosome biogenesis protein Nop53/GLTSCR2 [Interproscan]. 0.13 OrthoFinder
Transcript_contig_89559 89559 Ribosome biogenesis protein Nop53/GLTSCR2 [Interproscan]. 0.1 OrthoFinder
UNPLg00327.t1 No alias Ribosome biogenesis protein Nop53/GLTSCR2 [Interproscan]. 0.1 OrthoFinder
Vocar.0005s0065.1 32884006 Ribosome biogenesis protein Nop53/GLTSCR2 [Interproscan]. 0.02 OrthoFinder
XM_003054787.1 MicpuC2_49936, 49936 Nucleolar protein (Nop53) 0.07 OrthoFinder
lcl|BLLF01001581.1_cds_GFH20136.1_14613 HaLaN_17213, GFH20136 Ribosome biogenesis protein NOP53 0.03 OrthoFinder
lcl|LHPG02000004.1_cds_PRW58778.1_7387 PRW58778 Nucleolar 53 isoform A 0.05 OrthoFinder

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
BP GO:0000462 maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) IEP Enrichment
MF GO:0003674 molecular_function IEP Enrichment
MF GO:0003676 nucleic acid binding IEP Enrichment
MF GO:0003724 RNA helicase activity IEP Enrichment
MF GO:0005488 binding IEP Enrichment
MF GO:0005515 protein binding IEP Enrichment
CC GO:0005634 nucleus IEP Enrichment
CC GO:0005730 nucleolus IEP Enrichment
CC GO:0005732 sno(s)RNA-containing ribonucleoprotein complex IEP Enrichment
BP GO:0006139 nucleobase-containing compound metabolic process IEP Enrichment
BP GO:0006364 rRNA processing IEP Enrichment
BP GO:0006396 RNA processing IEP Enrichment
BP GO:0006725 cellular aromatic compound metabolic process IEP Enrichment
BP GO:0006807 nitrogen compound metabolic process IEP Enrichment
MF GO:0008134 transcription factor binding IEP Enrichment
MF GO:0008168 methyltransferase activity IEP Enrichment
BP GO:0016070 RNA metabolic process IEP Enrichment
BP GO:0016072 rRNA metabolic process IEP Enrichment
MF GO:0016741 transferase activity, transferring one-carbon groups IEP Enrichment
BP GO:0030490 maturation of SSU-rRNA IEP Enrichment
CC GO:0030684 preribosome IEP Enrichment
CC GO:0032040 small-subunit processome IEP Enrichment
BP GO:0032259 methylation IEP Enrichment
BP GO:0034470 ncRNA processing IEP Enrichment
BP GO:0034641 cellular nitrogen compound metabolic process IEP Enrichment
BP GO:0034660 ncRNA metabolic process IEP Enrichment
BP GO:0043170 macromolecule metabolic process IEP Enrichment
CC GO:0043226 organelle IEP Enrichment
CC GO:0043227 membrane-bounded organelle IEP Enrichment
CC GO:0043228 non-membrane-bounded organelle IEP Enrichment
CC GO:0043229 intracellular organelle IEP Enrichment
CC GO:0043231 intracellular membrane-bounded organelle IEP Enrichment
CC GO:0043232 intracellular non-membrane-bounded organelle IEP Enrichment
BP GO:0044237 cellular metabolic process IEP Enrichment
BP GO:0044238 primary metabolic process IEP Enrichment
BP GO:0046483 heterocycle metabolic process IEP Enrichment
BP GO:0071704 organic substance metabolic process IEP Enrichment
BP GO:0090304 nucleic acid metabolic process IEP Enrichment
MF GO:0097159 organic cyclic compound binding IEP Enrichment
BP GO:1901360 organic cyclic compound metabolic process IEP Enrichment
MF GO:1901363 heterocyclic compound binding IEP Enrichment
CC GO:1990904 ribonucleoprotein complex IEP Enrichment
InterPro domains Description Start Stop
IPR011687 Nop53/GLTSCR2 7 508
No external refs found!