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Aliases : 30774277
Description : Protein biosynthesis.cytosolic ribosome.large subunit (LSU).LSU processome component.GDP1 maturation factor
Gene families : OG_01_0002250 (OrthoFinder) Phylogenetic Tree(s): OG0002250_tree
Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.
| Type | Description | Actions |
|---|---|---|
| Neighborhood | HRR: Cre07.g347400 | |
| Cluster | HCCA: Cluster_15 |
| Target | Alias | Description | ECC score | Gene Family Method | Actions |
|---|---|---|---|---|---|
| Cz02g35040.t1 | No alias | G-patch domain [Interproscan]. | 0.07 | OrthoFinder | |
| Dusal.0185s00003.1 | 33185832 | G-patch domain [Interproscan]. | 0.03 | OrthoFinder | |
| OT_01G03500.1 | No alias | G-patch domain [Interproscan]. | 0.07 | OrthoFinder | |
| PTI_04G04430.1 | No alias | G-patch domain [Interproscan]. | 0.04 | OrthoFinder | |
| Sro650_g181440.1 | Contig647.g7760 | PIN2/TERF1-interacting telomerase inhibitor 1 | 0.07 | OrthoFinder | |
| TP01G00520.1 | No alias | G-patch domain [Interproscan]. | 0.02 | OrthoFinder | |
| TP03G08160.1 | No alias | G-patch domain [Interproscan]. | 0.04 | OrthoFinder | |
| Transcript_contig_54158 | 54158 | G-patch domain [Interproscan]. | 0.04 | OrthoFinder | |
| Vocar.0005s0050.1 | 32884038 | G-patch domain [Interproscan]. | 0.03 | OrthoFinder | |
| lcl|BLLF01000174.1_cds_GFH08637.1_3114 | HaLaN_03626, GFH08637 | G-patch domain-containing protein | 0.03 | OrthoFinder | |
| lcl|LHPG02000003.1_cds_PRW60174.1_6320 | PRW60174 | D111 G-patch domain-containing family | 0.08 | OrthoFinder | |
| lcl|VRMN01000001.1_cds_KAA8497644.1_6597 | KAA8497644 | PIN2/TERF1-interacting telomerase inhibitor 1 | 0.02 | OrthoFinder | |
| lcl|VRMN01000001.1_cds_KAA8499929.1_8882 | KAA8499929 | G-patch domain [Interproscan]. | 0.02 | OrthoFinder |
| Type | GO Term | Name | Evidence | Source |
|---|---|---|---|---|
No GO annotation available for this sequence |
| Type | GO Term | Name | Evidence | Source |
|---|---|---|---|---|
| BP | GO:0000462 | maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) | IEP | Enrichment |
| BP | GO:0001510 | RNA methylation | IEP | Enrichment |
| MF | GO:0003674 | molecular_function | IEP | Enrichment |
| MF | GO:0003676 | nucleic acid binding | IEP | Enrichment |
| MF | GO:0003724 | RNA helicase activity | IEP | Enrichment |
| MF | GO:0003899 | DNA-directed 5'-3' RNA polymerase activity | IEP | Enrichment |
| MF | GO:0004540 | ribonuclease activity | IEP | Enrichment |
| MF | GO:0005488 | binding | IEP | Enrichment |
| MF | GO:0005515 | protein binding | IEP | Enrichment |
| CC | GO:0005634 | nucleus | IEP | Enrichment |
| CC | GO:0005732 | sno(s)RNA-containing ribonucleoprotein complex | IEP | Enrichment |
| BP | GO:0006139 | nucleobase-containing compound metabolic process | IEP | Enrichment |
| BP | GO:0006364 | rRNA processing | IEP | Enrichment |
| BP | GO:0006396 | RNA processing | IEP | Enrichment |
| BP | GO:0006399 | tRNA metabolic process | IEP | Enrichment |
| BP | GO:0006400 | tRNA modification | IEP | Enrichment |
| BP | GO:0006725 | cellular aromatic compound metabolic process | IEP | Enrichment |
| BP | GO:0006807 | nitrogen compound metabolic process | IEP | Enrichment |
| BP | GO:0008033 | tRNA processing | IEP | Enrichment |
| BP | GO:0008152 | metabolic process | IEP | Enrichment |
| MF | GO:0008168 | methyltransferase activity | IEP | Enrichment |
| BP | GO:0009987 | cellular process | IEP | Enrichment |
| BP | GO:0016070 | RNA metabolic process | IEP | Enrichment |
| BP | GO:0016072 | rRNA metabolic process | IEP | Enrichment |
| MF | GO:0016741 | transferase activity, transferring one-carbon groups | IEP | Enrichment |
| BP | GO:0030488 | tRNA methylation | IEP | Enrichment |
| BP | GO:0030490 | maturation of SSU-rRNA | IEP | Enrichment |
| CC | GO:0030684 | preribosome | IEP | Enrichment |
| CC | GO:0032040 | small-subunit processome | IEP | Enrichment |
| BP | GO:0032259 | methylation | IEP | Enrichment |
| BP | GO:0034470 | ncRNA processing | IEP | Enrichment |
| BP | GO:0034641 | cellular nitrogen compound metabolic process | IEP | Enrichment |
| BP | GO:0034660 | ncRNA metabolic process | IEP | Enrichment |
| BP | GO:0043170 | macromolecule metabolic process | IEP | Enrichment |
| CC | GO:0043227 | membrane-bounded organelle | IEP | Enrichment |
| CC | GO:0043231 | intracellular membrane-bounded organelle | IEP | Enrichment |
| BP | GO:0043414 | macromolecule methylation | IEP | Enrichment |
| BP | GO:0044237 | cellular metabolic process | IEP | Enrichment |
| BP | GO:0044238 | primary metabolic process | IEP | Enrichment |
| BP | GO:0046483 | heterocycle metabolic process | IEP | Enrichment |
| BP | GO:0071704 | organic substance metabolic process | IEP | Enrichment |
| BP | GO:0090304 | nucleic acid metabolic process | IEP | Enrichment |
| MF | GO:0097159 | organic cyclic compound binding | IEP | Enrichment |
| MF | GO:0140098 | catalytic activity, acting on RNA | IEP | Enrichment |
| BP | GO:1901360 | organic cyclic compound metabolic process | IEP | Enrichment |
| MF | GO:1901363 | heterocyclic compound binding | IEP | Enrichment |
| CC | GO:1990904 | ribonucleoprotein complex | IEP | Enrichment |
| InterPro domains | Description | Start | Stop |
|---|---|---|---|
| IPR000467 | G_patch_dom | 20 | 62 |
| No external refs found! |