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  5. Cre07.g344050

Cre07.g344050 (30774587)


Aliases : 30774587

Description : Protein biosynthesis.cytosolic ribosome.small subunit (SSU).SSU processome.TOZ assembly factor


Gene families : OG_01_0000612 (OrthoFinder) Phylogenetic Tree(s): OG0000612_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Cre07.g344050
Cluster HCCA: Cluster_18

Target Alias Description ECC score Gene Family Method Actions
Cpa|evm.model.tig00000704.61 tig00000704_g3346.t2 Protein biosynthesis.cytosolic ribosome.small subunit... 0.05 OrthoFinder
Cz04g09230.t1 No alias WD40 repeat; Small-subunit processome, Utp13 [Interproscan]. 0.19 OrthoFinder
Dusal.0002s00015.1 33187975 WD40 repeat [Interproscan]. 0.03 OrthoFinder
EOD29254 No alias Small-subunit processome, Utp13; WD40 repeat [Interproscan]. 0.14 OrthoFinder
OT_08G01420.1 No alias Small-subunit processome, Utp13; WD40 repeat [Interproscan]. 0.11 OrthoFinder
PTI_06G04180.1 No alias Small-subunit processome, Utp13; WD40 repeat [Interproscan]. 0.22 OrthoFinder
Sro1027_g232980.1 Contig109.g1249 Transducin beta-like protein 3 0.15 OrthoFinder
Sro2695_g334900.1 Contig897.g9510 Transducin beta-like 3 0.03 OrthoFinder
TP04G06150.1 No alias Small-subunit processome, Utp13; WD40 repeat [Interproscan]. 0.11 OrthoFinder
Transcript_contig_57084 57084 Small-subunit processome, Utp13; WD40 repeat [Interproscan]. 0.13 OrthoFinder
Vocar.0011s0002.1 32895390 WD40 repeat; Small-subunit processome, Utp13 [Interproscan]. 0.07 OrthoFinder
XM_002503015.1 MICPUN_83206, 83206 WD40 repeat; Small-subunit processome, Utp13 [Interproscan]. 0.25 OrthoFinder
XM_003058642.1 MicpuC2_518, 518 Small-subunit processome, Utp13; WD40 repeat [Interproscan]. 0.08 OrthoFinder
lcl|BLLF01000847.1_cds_GFH15415.1_9892 HaLaN_11639, GFH15415 WD_REPEATS_REGION domain-containing protein 0.04 OrthoFinder
lcl|VRMN01000007.1_cds_KAA8493381.1_9682 KAA8493381 Transducin beta-like protein 3 0.08 OrthoFinder

Type GO Term Name Evidence Source
MF GO:0005515 protein binding IEA Interproscan
BP GO:0006364 rRNA processing IEA Interproscan
CC GO:0032040 small-subunit processome IEA Interproscan
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Type GO Term Name Evidence Source
BP GO:0000462 maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) IEP Enrichment
BP GO:0001510 RNA methylation IEP Enrichment
MF GO:0003676 nucleic acid binding IEP Enrichment
MF GO:0003723 RNA binding IEP Enrichment
MF GO:0003724 RNA helicase activity IEP Enrichment
MF GO:0003899 DNA-directed 5'-3' RNA polymerase activity IEP Enrichment
CC GO:0005634 nucleus IEP Enrichment
CC GO:0005730 nucleolus IEP Enrichment
CC GO:0005732 sno(s)RNA-containing ribonucleoprotein complex IEP Enrichment
BP GO:0006351 transcription, DNA-templated IEP Enrichment
BP GO:0006399 tRNA metabolic process IEP Enrichment
BP GO:0008033 tRNA processing IEP Enrichment
MF GO:0008134 transcription factor binding IEP Enrichment
MF GO:0008168 methyltransferase activity IEP Enrichment
MF GO:0008175 tRNA methyltransferase activity IEP Enrichment
MF GO:0016426 tRNA (adenine) methyltransferase activity IEP Enrichment
MF GO:0016429 tRNA (adenine-N1-)-methyltransferase activity IEP Enrichment
MF GO:0016741 transferase activity, transferring one-carbon groups IEP Enrichment
MF GO:0016779 nucleotidyltransferase activity IEP Enrichment
MF GO:0017150 tRNA dihydrouridine synthase activity IEP Enrichment
BP GO:0030488 tRNA methylation IEP Enrichment
BP GO:0030490 maturation of SSU-rRNA IEP Enrichment
BP GO:0032259 methylation IEP Enrichment
BP GO:0032774 RNA biosynthetic process IEP Enrichment
MF GO:0034062 5'-3' RNA polymerase activity IEP Enrichment
BP GO:0034645 cellular macromolecule biosynthetic process IEP Enrichment
CC GO:0043226 organelle IEP Enrichment
CC GO:0043227 membrane-bounded organelle IEP Enrichment
CC GO:0043228 non-membrane-bounded organelle IEP Enrichment
CC GO:0043229 intracellular organelle IEP Enrichment
CC GO:0043231 intracellular membrane-bounded organelle IEP Enrichment
CC GO:0043232 intracellular non-membrane-bounded organelle IEP Enrichment
BP GO:0043414 macromolecule methylation IEP Enrichment
MF GO:0097159 organic cyclic compound binding IEP Enrichment
BP GO:0097659 nucleic acid-templated transcription IEP Enrichment
MF GO:0097747 RNA polymerase activity IEP Enrichment
CC GO:0110165 cellular anatomical entity IEP Enrichment
MF GO:0140098 catalytic activity, acting on RNA IEP Enrichment
MF GO:0140101 catalytic activity, acting on a tRNA IEP Enrichment
MF GO:1901363 heterocyclic compound binding IEP Enrichment
InterPro domains Description Start Stop
IPR013934 SSU_processome_Utp13 760 917
IPR001680 WD40_repeat 580 612
IPR001680 WD40_repeat 619 654
IPR001680 WD40_repeat 176 213
IPR001680 WD40_repeat 658 696
IPR001680 WD40_repeat 133 170
IPR001680 WD40_repeat 218 255
IPR001680 WD40_repeat 483 521
No external refs found!