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Aliases : tig00000402_g193.t1
Description : RNA processing.RNA splicing.spliceosome-associated non-snRNP factors.SCL28/30/33 splicing factor
Gene families : OG_01_0000048 (OrthoFinder) Phylogenetic Tree(s): OG0000048_tree
Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.
| Type | Description | Actions |
|---|---|---|
| Neighborhood | HRR: Cpa|evm.model.tig00000402.16 | |
| Cluster | HCCA: Cluster_166 |
| Target | Alias | Description | ECC score | Gene Family Method | Actions |
|---|---|---|---|---|---|
| Cre01.g024200 | 30788323 | RNA processing.RNA 3-end polyadenylation.Cleavage... | 0.02 | OrthoFinder | |
| Cre06.g288750 | 30780037, CBP20 | No description available | 0.02 | OrthoFinder | |
| Cre13.g586916 | 30783868 | RNA processing.RNA splicing.spliceosome-associated... | 0.03 | OrthoFinder | |
| Cz08g24230.t1 | No alias | RNA recognition motif domain [Interproscan]. | 0.02 | OrthoFinder | |
| Cz14g08190.t1 | No alias | RNA recognition motif domain [Interproscan]. | 0.02 | OrthoFinder | |
| OT_01G05710.1 | No alias | RNA recognition motif domain; Cleavage stimulation... | 0.02 | OrthoFinder | |
| PTI_06G03380.1 | No alias | RNA recognition motif domain [Interproscan]. | 0.02 | OrthoFinder | |
| Transcript_contig_57014 | 57014 | RNA recognition motif domain; Cleavage stimulation... | 0.01 | OrthoFinder | |
| Vocar.0001s0026.1 | 32885509 | RNA recognition motif domain [Interproscan]. | 0.03 | OrthoFinder | |
| Vocar.0001s1410.1 | 32885138 | RNA recognition motif domain [Interproscan]. | 0.02 | OrthoFinder | |
| Vocar.0037s0092.1 | 32897541 | RNA recognition motif domain [Interproscan]. | 0.02 | OrthoFinder | |
| lcl|BLLF01007141.1_cds_GFH32791.1_27268 | HaLaN_32072, GFH32791 | RRM domain-containing protein | 0.04 | OrthoFinder | |
| lcl|LHPG02000003.1_cds_PRW59988.1_6338 | PRW59988 | Serine arginine-rich SC35-like splicing factor SCL30A isoform X1 | 0.02 | OrthoFinder |
| Type | GO Term | Name | Evidence | Source |
|---|---|---|---|---|
No GO annotation available for this sequence |
| Type | GO Term | Name | Evidence | Source |
|---|---|---|---|---|
| BP | GO:0000096 | sulfur amino acid metabolic process | IEP | Enrichment |
| CC | GO:0000808 | origin recognition complex | IEP | Enrichment |
| BP | GO:0001522 | pseudouridine synthesis | IEP | Enrichment |
| MF | GO:0003676 | nucleic acid binding | IEP | Enrichment |
| MF | GO:0004129 | cytochrome-c oxidase activity | IEP | Enrichment |
| MF | GO:0004540 | ribonuclease activity | IEP | Enrichment |
| MF | GO:0004664 | prephenate dehydratase activity | IEP | Enrichment |
| MF | GO:0005215 | transporter activity | IEP | Enrichment |
| MF | GO:0005244 | voltage-gated ion channel activity | IEP | Enrichment |
| MF | GO:0005247 | voltage-gated chloride channel activity | IEP | Enrichment |
| MF | GO:0005253 | anion channel activity | IEP | Enrichment |
| MF | GO:0005254 | chloride channel activity | IEP | Enrichment |
| CC | GO:0005575 | cellular_component | IEP | Enrichment |
| CC | GO:0005743 | mitochondrial inner membrane | IEP | Enrichment |
| BP | GO:0006534 | cysteine metabolic process | IEP | Enrichment |
| BP | GO:0006790 | sulfur compound metabolic process | IEP | Enrichment |
| BP | GO:0006821 | chloride transport | IEP | Enrichment |
| MF | GO:0008308 | voltage-gated anion channel activity | IEP | Enrichment |
| MF | GO:0008324 | cation transmembrane transporter activity | IEP | Enrichment |
| BP | GO:0009069 | serine family amino acid metabolic process | IEP | Enrichment |
| BP | GO:0009092 | homoserine metabolic process | IEP | Enrichment |
| MF | GO:0015075 | ion transmembrane transporter activity | IEP | Enrichment |
| MF | GO:0015103 | inorganic anion transmembrane transporter activity | IEP | Enrichment |
| MF | GO:0016675 | oxidoreductase activity, acting on a heme group of donors | IEP | Enrichment |
| MF | GO:0016835 | carbon-oxygen lyase activity | IEP | Enrichment |
| MF | GO:0016836 | hydro-lyase activity | IEP | Enrichment |
| BP | GO:0019346 | transsulfuration | IEP | Enrichment |
| CC | GO:0019866 | organelle inner membrane | IEP | Enrichment |
| MF | GO:0019899 | enzyme binding | IEP | Enrichment |
| MF | GO:0019902 | phosphatase binding | IEP | Enrichment |
| MF | GO:0019903 | protein phosphatase binding | IEP | Enrichment |
| MF | GO:0022832 | voltage-gated channel activity | IEP | Enrichment |
| MF | GO:0022836 | gated channel activity | IEP | Enrichment |
| MF | GO:0022857 | transmembrane transporter activity | IEP | Enrichment |
| CC | GO:0031090 | organelle membrane | IEP | Enrichment |
| CC | GO:0031966 | mitochondrial membrane | IEP | Enrichment |
| BP | GO:0050667 | homocysteine metabolic process | IEP | Enrichment |
| CC | GO:0110165 | cellular anatomical entity | IEP | Enrichment |
| BP | GO:1901605 | alpha-amino acid metabolic process | IEP | Enrichment |
| InterPro domains | Description | Start | Stop |
|---|---|---|---|
| IPR000504 | RRM_dom | 12 | 80 |
| No external refs found! |