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  5. Cpa|evm.model.tig00000383.37

Cpa|evm.model.tig00000383.37 (tig00000383_g24647.t1)


Aliases : tig00000383_g24647.t1

Description : Splicing factor U2af large subunit A OS=Nicotiana plumbaginifolia


Gene families : OG_01_0000163 (OrthoFinder) Phylogenetic Tree(s): OG0000163_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Cpa|evm.model.tig00000383.37
Cluster HCCA: Cluster_148

Target Alias Description ECC score Gene Family Method Actions
Cz03g21120.t1 No alias RNA recognition motif domain [Interproscan]. 0.01 OrthoFinder
EOD34357 No alias RNA recognition motif domain [Interproscan]. 0.03 OrthoFinder
OT_03G00400.1 No alias RNA recognition motif domain [Interproscan]. 0.02 OrthoFinder
PTI_02G06030.1 No alias RNA recognition motif domain [Interproscan]. 0.02 OrthoFinder
Sro760_g198350.1 Contig3371.g26396 U2AF 65 kDa subunit 0.01 OrthoFinder
Transcript_contig_55294 55294 RNA recognition motif domain [Interproscan]. 0.01 OrthoFinder
UNPLg00510.t1 No alias RNA recognition motif domain [Interproscan]. 0.03 OrthoFinder
UNPLg00511.t1 No alias Hypothetical protein 0.04 OrthoFinder
UNPLg00683.t1 No alias RNA recognition motif domain [Interproscan]. 0.02 OrthoFinder
Vocar.0005s0091.1 32883973 Hypothetical protein 0.02 OrthoFinder
XM_002506777.1 MICPUN_89118, 89118 RNA recognition motif domain [Interproscan]. 0.01 OrthoFinder
XM_003056228.1 MicpuC2_70844, 70844 RNA binding protein 0.02 OrthoFinder
XM_003063178.1 MicpuC2_7420, 7420 Chorismate pyruvate-lyase Rv2949c-like [Interproscan]. 0.03 OrthoFinder
lcl|BLLF01000677.1_cds_GFH14018.1_8495 HaLaN_09991, GFH14018 U2 snRNP auxiliary factor large subunit 0.02 OrthoFinder
lcl|LHPG02000011.1_cds_PRW45747.1_1280 PRW45747 Chorismate lyase isoform B 0.01 OrthoFinder
lcl|VRMN01000001.1_cds_KAA8499756.1_8709 KAA8499756 Protein ycf21 0.02 OrthoFinder

Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEA Interproscan
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Type GO Term Name Evidence Source
BP GO:0000105 histidine biosynthetic process IEP Enrichment
MF GO:0003678 DNA helicase activity IEP Enrichment
MF GO:0003723 RNA binding IEP Enrichment
MF GO:0003729 mRNA binding IEP Enrichment
MF GO:0003743 translation initiation factor activity IEP Enrichment
MF GO:0003747 translation release factor activity IEP Enrichment
MF GO:0004424 imidazoleglycerol-phosphate dehydratase activity IEP Enrichment
MF GO:0004784 superoxide dismutase activity IEP Enrichment
MF GO:0004813 alanine-tRNA ligase activity IEP Enrichment
MF GO:0005319 lipid transporter activity IEP Enrichment
MF GO:0005515 protein binding IEP Enrichment
MF GO:0005548 phospholipid transporter activity IEP Enrichment
CC GO:0005643 nuclear pore IEP Enrichment
CC GO:0005685 U1 snRNP IEP Enrichment
BP GO:0006082 organic acid metabolic process IEP Enrichment
BP GO:0006139 nucleobase-containing compound metabolic process IEP Enrichment
BP GO:0006302 double-strand break repair IEP Enrichment
BP GO:0006303 double-strand break repair via nonhomologous end joining IEP Enrichment
BP GO:0006351 transcription, DNA-templated IEP Enrichment
BP GO:0006415 translational termination IEP Enrichment
BP GO:0006419 alanyl-tRNA aminoacylation IEP Enrichment
BP GO:0006520 cellular amino acid metabolic process IEP Enrichment
BP GO:0006547 histidine metabolic process IEP Enrichment
BP GO:0006605 protein targeting IEP Enrichment
BP GO:0006612 protein targeting to membrane IEP Enrichment
BP GO:0006613 cotranslational protein targeting to membrane IEP Enrichment
BP GO:0006614 SRP-dependent cotranslational protein targeting to membrane IEP Enrichment
BP GO:0006621 protein retention in ER lumen IEP Enrichment
BP GO:0006725 cellular aromatic compound metabolic process IEP Enrichment
BP GO:0006801 superoxide metabolic process IEP Enrichment
BP GO:0006807 nitrogen compound metabolic process IEP Enrichment
MF GO:0008079 translation termination factor activity IEP Enrichment
MF GO:0008135 translation factor activity, RNA binding IEP Enrichment
BP GO:0008150 biological_process IEP Enrichment
BP GO:0008152 metabolic process IEP Enrichment
MF GO:0008312 7S RNA binding IEP Enrichment
BP GO:0009059 macromolecule biosynthetic process IEP Enrichment
BP GO:0009987 cellular process IEP Enrichment
BP GO:0016070 RNA metabolic process IEP Enrichment
BP GO:0016579 protein deubiquitination IEP Enrichment
MF GO:0016721 oxidoreductase activity, acting on superoxide radicals as acceptor IEP Enrichment
MF GO:0016835 carbon-oxygen lyase activity IEP Enrichment
MF GO:0016836 hydro-lyase activity IEP Enrichment
BP GO:0019752 carboxylic acid metabolic process IEP Enrichment
BP GO:0022411 cellular component disassembly IEP Enrichment
CC GO:0030532 small nuclear ribonucleoprotein complex IEP Enrichment
BP GO:0032507 maintenance of protein location in cell IEP Enrichment
BP GO:0032774 RNA biosynthetic process IEP Enrichment
BP GO:0032984 protein-containing complex disassembly IEP Enrichment
BP GO:0033365 protein localization to organelle IEP Enrichment
BP GO:0034613 cellular protein localization IEP Enrichment
BP GO:0034641 cellular nitrogen compound metabolic process IEP Enrichment
BP GO:0034645 cellular macromolecule biosynthetic process IEP Enrichment
BP GO:0035437 maintenance of protein localization in endoplasmic reticulum IEP Enrichment
BP GO:0043170 macromolecule metabolic process IEP Enrichment
BP GO:0043436 oxoacid metabolic process IEP Enrichment
BP GO:0043624 cellular protein complex disassembly IEP Enrichment
BP GO:0043933 protein-containing complex subunit organization IEP Enrichment
BP GO:0044237 cellular metabolic process IEP Enrichment
BP GO:0044238 primary metabolic process IEP Enrichment
BP GO:0044260 cellular macromolecule metabolic process IEP Enrichment
BP GO:0045047 protein targeting to ER IEP Enrichment
MF GO:0045182 translation regulator activity IEP Enrichment
BP GO:0045185 maintenance of protein location IEP Enrichment
BP GO:0046483 heterocycle metabolic process IEP Enrichment
BP GO:0051235 maintenance of location IEP Enrichment
BP GO:0051651 maintenance of location in cell IEP Enrichment
BP GO:0051668 localization within membrane IEP Enrichment
BP GO:0070646 protein modification by small protein removal IEP Enrichment
BP GO:0070647 protein modification by small protein conjugation or removal IEP Enrichment
BP GO:0070727 cellular macromolecule localization IEP Enrichment
BP GO:0070972 protein localization to endoplasmic reticulum IEP Enrichment
BP GO:0071704 organic substance metabolic process IEP Enrichment
BP GO:0072593 reactive oxygen species metabolic process IEP Enrichment
BP GO:0072594 establishment of protein localization to organelle IEP Enrichment
BP GO:0072595 maintenance of protein localization in organelle IEP Enrichment
BP GO:0072599 establishment of protein localization to endoplasmic reticulum IEP Enrichment
BP GO:0072657 protein localization to membrane IEP Enrichment
MF GO:0090079 translation regulator activity, nucleic acid binding IEP Enrichment
BP GO:0090150 establishment of protein localization to membrane IEP Enrichment
BP GO:0090304 nucleic acid metabolic process IEP Enrichment
CC GO:0097525 spliceosomal snRNP complex IEP Enrichment
BP GO:0097659 nucleic acid-templated transcription IEP Enrichment
CC GO:0120114 Sm-like protein family complex IEP Enrichment
CC GO:0140513 nuclear protein-containing complex IEP Enrichment
BP GO:1901360 organic cyclic compound metabolic process IEP Enrichment
BP GO:1901564 organonitrogen compound metabolic process IEP Enrichment
CC GO:1990904 ribonucleoprotein complex IEP Enrichment
InterPro domains Description Start Stop
IPR000504 RRM_dom 130 170
IPR000504 RRM_dom 265 325
No external refs found!