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  5. Cre04.g217550

Cre04.g217550 (30791382, EIF3C)


Aliases : 30791382, EIF3C

Description : Protein biosynthesis.translation initiation.pre-initiation complex (PIC).eIF3 mRNA-to-PIC binding complex.eIF3c component


Gene families : OG_01_0002434 (OrthoFinder) Phylogenetic Tree(s): OG0002434_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Cre04.g217550
Cluster HCCA: Cluster_68

Target Alias Description ECC score Gene Family Method Actions
Cpa|evm.model.tig00000842.12 tig00000842_g4832.t2 Protein biosynthesis.translation... 0.12 OrthoFinder
Cz02g39170.t1 No alias Eukaryotic translation initiation factor 3 subunit C,... 0.06 OrthoFinder
Dusal.0036s00034.1 33190405 Eukaryotic translation initiation factor 3 subunit C,... 0.06 OrthoFinder
EOD06275 No alias Hypothetical protein [Ensembl]. 0.07 OrthoFinder
EOD08410 No alias Eukaryotic translation initiation factor 3 subunit C,... 0.06 OrthoFinder
OT_02G02330.1 No alias Proteasome component (PCI) domain; Eukaryotic... 0.05 OrthoFinder
PTI_18G01660.1 No alias Eukaryotic translation initiation factor 3 subunit C,... 0.09 OrthoFinder
Sro201_g085140.1 Contig2914.g23183 Factor 3 subunit C 0.17 OrthoFinder
TP05G08330.1 No alias Proteasome component (PCI) domain; Eukaryotic... 0.05 OrthoFinder
Transcript_contig_1972 1972 Hypothetical protein 0.02 OrthoFinder
XM_003059789.1 MicpuC2_59561, 59561 Eukaryotic translation initiation factor 3 subunit C,... 0.07 OrthoFinder
lcl|BLLF01000302.1_cds_GFH10279.1_4756 HaLaN_05562, GFH10279 Eukaryotic translation initiation factor 3 subunit C 0.06 OrthoFinder
lcl|BLLF01000302.1_cds_GFH10280.1_4757 HaLaN_05563, GFH10280 EIF3 p110 0.08 OrthoFinder
lcl|BLLF01002925.1_cds_GFH25805.1_20282 HaLaN_23833, GFH25805 EIF3 p110 0.09 OrthoFinder
lcl|BLLF01002925.1_cds_GFH25806.1_20283 HaLaN_23834, GFH25806 EIF3 p110 0.02 OrthoFinder
lcl|BLLF01007301.1_cds_GFH32888.1_27365 HaLaN_32179, GFH32888 EIF3 p110 0.02 OrthoFinder
lcl|LHPG02000022.1_cds_PRW20730.1_5284 PRW20730 Eukaryotic translation initiation factor 3 subunit C 0.1 OrthoFinder
lcl|VRMN01000012.1_cds_KAA8491600.1_5068 KAA8491600 Eukaryotic translation initiation factor 3 subunit C 0.06 OrthoFinder

Type GO Term Name Evidence Source
MF GO:0003743 translation initiation factor activity IEA Interproscan
CC GO:0005852 eukaryotic translation initiation factor 3 complex IEA Interproscan
BP GO:0006413 translational initiation IEA Interproscan
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Type GO Term Name Evidence Source
BP GO:0000096 sulfur amino acid metabolic process IEP Enrichment
MF GO:0000166 nucleotide binding IEP Enrichment
MF GO:0003883 CTP synthase activity IEP Enrichment
MF GO:0003924 GTPase activity IEP Enrichment
MF GO:0004019 adenylosuccinate synthase activity IEP Enrichment
MF GO:0004812 aminoacyl-tRNA ligase activity IEP Enrichment
MF GO:0004814 arginine-tRNA ligase activity IEP Enrichment
MF GO:0005047 signal recognition particle binding IEP Enrichment
MF GO:0005524 ATP binding IEP Enrichment
MF GO:0005525 GTP binding IEP Enrichment
CC GO:0005737 cytoplasm IEP Enrichment
CC GO:0005786 signal recognition particle, endoplasmic reticulum targeting IEP Enrichment
BP GO:0006082 organic acid metabolic process IEP Enrichment
BP GO:0006323 DNA packaging IEP Enrichment
BP GO:0006399 tRNA metabolic process IEP Enrichment
BP GO:0006418 tRNA aminoacylation for protein translation IEP Enrichment
BP GO:0006420 arginyl-tRNA aminoacylation IEP Enrichment
BP GO:0006432 phenylalanyl-tRNA aminoacylation IEP Enrichment
BP GO:0006520 cellular amino acid metabolic process IEP Enrichment
BP GO:0006534 cysteine metabolic process IEP Enrichment
BP GO:0006605 protein targeting IEP Enrichment
BP GO:0006612 protein targeting to membrane IEP Enrichment
BP GO:0006613 cotranslational protein targeting to membrane IEP Enrichment
BP GO:0006614 SRP-dependent cotranslational protein targeting to membrane IEP Enrichment
BP GO:0006886 intracellular protein transport IEP Enrichment
BP GO:0008104 protein localization IEP Enrichment
MF GO:0008312 7S RNA binding IEP Enrichment
BP GO:0009069 serine family amino acid metabolic process IEP Enrichment
BP GO:0009092 homoserine metabolic process IEP Enrichment
BP GO:0015031 protein transport IEP Enrichment
MF GO:0016462 pyrophosphatase activity IEP Enrichment
MF GO:0016817 hydrolase activity, acting on acid anhydrides IEP Enrichment
MF GO:0016818 hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides IEP Enrichment
MF GO:0016874 ligase activity IEP Enrichment
MF GO:0016875 ligase activity, forming carbon-oxygen bonds IEP Enrichment
MF GO:0016879 ligase activity, forming carbon-nitrogen bonds IEP Enrichment
MF GO:0016887 ATPase IEP Enrichment
MF GO:0017076 purine nucleotide binding IEP Enrichment
MF GO:0017111 nucleoside-triphosphatase activity IEP Enrichment
MF GO:0019001 guanyl nucleotide binding IEP Enrichment
BP GO:0019346 transsulfuration IEP Enrichment
BP GO:0019752 carboxylic acid metabolic process IEP Enrichment
BP GO:0030261 chromosome condensation IEP Enrichment
MF GO:0030554 adenyl nucleotide binding IEP Enrichment
MF GO:0032553 ribonucleotide binding IEP Enrichment
MF GO:0032555 purine ribonucleotide binding IEP Enrichment
MF GO:0032559 adenyl ribonucleotide binding IEP Enrichment
MF GO:0032561 guanyl ribonucleotide binding IEP Enrichment
BP GO:0033036 macromolecule localization IEP Enrichment
BP GO:0033365 protein localization to organelle IEP Enrichment
BP GO:0034613 cellular protein localization IEP Enrichment
BP GO:0034660 ncRNA metabolic process IEP Enrichment
MF GO:0035639 purine ribonucleoside triphosphate binding IEP Enrichment
MF GO:0036094 small molecule binding IEP Enrichment
MF GO:0043021 ribonucleoprotein complex binding IEP Enrichment
BP GO:0043038 amino acid activation IEP Enrichment
BP GO:0043039 tRNA aminoacylation IEP Enrichment
MF GO:0043167 ion binding IEP Enrichment
MF GO:0043168 anion binding IEP Enrichment
BP GO:0043436 oxoacid metabolic process IEP Enrichment
BP GO:0044281 small molecule metabolic process IEP Enrichment
MF GO:0044877 protein-containing complex binding IEP Enrichment
BP GO:0045047 protein targeting to ER IEP Enrichment
BP GO:0045184 establishment of protein localization IEP Enrichment
BP GO:0046907 intracellular transport IEP Enrichment
CC GO:0048500 signal recognition particle IEP Enrichment
BP GO:0050667 homocysteine metabolic process IEP Enrichment
BP GO:0051641 cellular localization IEP Enrichment
BP GO:0051649 establishment of localization in cell IEP Enrichment
BP GO:0051668 localization within membrane IEP Enrichment
BP GO:0070727 cellular macromolecule localization IEP Enrichment
BP GO:0070972 protein localization to endoplasmic reticulum IEP Enrichment
BP GO:0071103 DNA conformation change IEP Enrichment
BP GO:0071702 organic substance transport IEP Enrichment
BP GO:0071705 nitrogen compound transport IEP Enrichment
BP GO:0072594 establishment of protein localization to organelle IEP Enrichment
BP GO:0072599 establishment of protein localization to endoplasmic reticulum IEP Enrichment
BP GO:0072657 protein localization to membrane IEP Enrichment
BP GO:0090150 establishment of protein localization to membrane IEP Enrichment
MF GO:0097367 carbohydrate derivative binding IEP Enrichment
MF GO:0140098 catalytic activity, acting on RNA IEP Enrichment
MF GO:0140101 catalytic activity, acting on a tRNA IEP Enrichment
MF GO:1901265 nucleoside phosphate binding IEP Enrichment
CC GO:1990904 ribonucleoprotein complex IEP Enrichment
InterPro domains Description Start Stop
IPR000717 PCI_dom 662 790
IPR000717 PCI_dom 885 1013
IPR008905 EIF3C_N_dom 70 650
No external refs found!